Variant report

Variant	rs7168076
Chromosome Location	chr15:52608492-52608493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52584675..52589116-chr15:52605862..52610678,6	MCF-7	breast:
2	chr15:52606783..52608986-chr15:52658810..52661433,2	MCF-7	breast:
3	chr15:52606639..52609024-chr15:52615488..52617406,2	K562	blood:

Variant related genes	Relation type
ENSG00000197535	Chromatin interaction
ENSG00000128833	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10518688	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1108808	1.00[EUR][1000 genomes]
rs12101973	1.00[EUR][1000 genomes]
rs13329278	1.00[EUR][1000 genomes]
rs13329402	1.00[EUR][1000 genomes]
rs13329417	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13329500	1.00[EUR][1000 genomes]
rs16964891	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964903	1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964910	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16964915	1.00[EUR][1000 genomes]
rs16964919	1.00[EUR][1000 genomes]
rs16964921	1.00[EUR][1000 genomes]
rs16964924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964927	1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964928	1.00[EUR][1000 genomes]
rs16964935	1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16964944	1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16964952	1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1724577	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2222656	1.00[JPT][hapmap]
rs2414137	1.00[EUR][1000 genomes]
rs2414138	1.00[EUR][1000 genomes]
rs2600903	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2600904	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28366864	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28367336	1.00[EUR][1000 genomes]
rs28367508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28374631	1.00[EUR][1000 genomes]
rs28409636	1.00[EUR][1000 genomes]
rs28409760	1.00[EUR][1000 genomes]
rs28415069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415472	0.80[ASN][1000 genomes]
rs28421476	0.80[ASN][1000 genomes]
rs28426997	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28444393	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28462026	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28475475	1.00[EUR][1000 genomes]
rs28479614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485251	0.80[ASN][1000 genomes]
rs28488423	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28496242	1.00[EUR][1000 genomes]
rs28499517	0.80[ASN][1000 genomes]
rs28503750	1.00[EUR][1000 genomes]
rs28508266	1.00[EUR][1000 genomes]
rs28514341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28515624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532168	1.00[EUR][1000 genomes]
rs28534436	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28538563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28552981	1.00[EUR][1000 genomes]
rs28556657	1.00[EUR][1000 genomes]
rs28564655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590330	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28594692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613360	0.80[ASN][1000 genomes]
rs28618215	0.93[ASN][1000 genomes]
rs28633243	1.00[EUR][1000 genomes]
rs28638475	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28649737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28650960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653534	1.00[EUR][1000 genomes]
rs28655190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28660682	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28663524	0.80[ASN][1000 genomes]
rs28669685	0.93[ASN][1000 genomes]
rs28682547	0.80[ASN][1000 genomes]
rs28693941	1.00[EUR][1000 genomes]
rs28697879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729511	0.80[ASN][1000 genomes]
rs28735959	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28756182	1.00[EUR][1000 genomes]
rs4499185	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624108	1.00[EUR][1000 genomes]
rs4776042	0.93[ASN][1000 genomes]
rs4987194	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57864537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58029714	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58812575	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7163569	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7164722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7164872	1.00[EUR][1000 genomes]
rs7166034	1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7167181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167890	0.82[ASN][1000 genomes]
rs7167916	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7168251	1.00[EUR][1000 genomes]
rs7169104	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7169346	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170622	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178069	1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7179156	1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7182148	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73408408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408415	1.00[EUR][1000 genomes]
rs73408465	1.00[EUR][1000 genomes]
rs73408469	1.00[EUR][1000 genomes]
rs73408478	1.00[EUR][1000 genomes]
rs73410713	1.00[EUR][1000 genomes]
rs73410715	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73410759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7342673	1.00[JPT][hapmap]
rs744501	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8023623	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8024412	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027637	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027777	1.00[EUR][1000 genomes]
rs8035199	1.00[EUR][1000 genomes]
rs8040369	1.00[EUR][1000 genomes]
rs8041819	1.00[EUR][1000 genomes]
rs8042235	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042245	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs876549	1.00[EUR][1000 genomes]
rs9744852	1.00[EUR][1000 genomes]
rs9920195	0.80[ASN][1000 genomes]
rs9920739	1.00[EUR][1000 genomes]
rs9920749	1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52593600-52608600	Weak transcription	Fetal Brain Male	brain
2	chr15:52595400-52610800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52595400-52614200	Weak transcription	Fetal Lung	lung
4	chr15:52595600-52609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:52595800-52628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:52596000-52608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:52596000-52611000	Weak transcription	Fetal Stomach	stomach
8	chr15:52596200-52623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:52596400-52608600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:52597600-52608600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:52597800-52629600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:52597800-52643400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:52599200-52611000	Weak transcription	NHLF	lung
14	chr15:52599400-52611000	Weak transcription	Fetal Thymus	thymus
15	chr15:52599400-52611000	Weak transcription	Thymus	Thymus
16	chr15:52599800-52611000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:52599800-52611000	Weak transcription	A549	lung
18	chr15:52600400-52611200	Weak transcription	Colonic Mucosa	Colon
19	chr15:52600600-52611000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:52600600-52624200	Weak transcription	Liver	Liver
21	chr15:52600800-52622800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr15:52600800-52646600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr15:52601000-52608600	Weak transcription	Brain Anterior Caudate	brain
24	chr15:52601000-52610000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:52601000-52611000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:52601000-52622600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:52601000-52643400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr15:52601200-52611000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:52601200-52615200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:52601200-52622600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:52601400-52609800	Weak transcription	Gastric	stomach
32	chr15:52601400-52611000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:52601400-52611000	Weak transcription	Right Atrium	heart
34	chr15:52601400-52612200	Weak transcription	Right Ventricle	heart
35	chr15:52601600-52622400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:52601600-52622800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:52601800-52611000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:52601800-52611000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr15:52601800-52616600	Strong transcription	Primary B cells from cord blood	blood
40	chr15:52601800-52621400	Weak transcription	Psoas Muscle	Psoas
41	chr15:52602000-52609400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:52602000-52609800	Weak transcription	Pancreas	Pancrea
43	chr15:52602000-52611000	Weak transcription	Esophagus	oesophagus
44	chr15:52602000-52622800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:52602200-52611000	Weak transcription	Fetal Heart	heart
46	chr15:52602200-52622600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:52602600-52608600	Weak transcription	Osteobl	bone
48	chr15:52602600-52622800	Strong transcription	Primary B cells from peripheral blood	blood
49	chr15:52603000-52609000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:52603200-52616400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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