The 2.0 version of rSNPBase

Variant report

Variant rs28552981
Chromosome Location chr15:52595900-52595901
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52588000-52598200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr15:52588200-52602200 Weak transcription HSMM muscle
3 chr15:52588400-52598400 Weak transcription HMEC breast
4 chr15:52588400-52602800 Weak transcription Aorta Aorta
5 chr15:52589000-52598400 Weak transcription A549 lung
6 chr15:52591000-52601000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr15:52591200-52598200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr15:52591200-52602400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr15:52591400-52598200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr15:52592800-52597800 Weak transcription Monocytes-CD14+_RO01746 blood
11 chr15:52593400-52598400 Weak transcription Osteobl bone
12 chr15:52593600-52608600 Weak transcription Fetal Brain Male brain
13 chr15:52594400-52601200 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr15:52595000-52596000 Enhancers iPS-15b Cell Line embryonic stem cell
15 chr15:52595000-52596200 Enhancers ES-I3 Cell Line embryonic stem cell
16 chr15:52595000-52600800 Weak transcription Pancreas Pancrea
17 chr15:52595200-52596000 Enhancers H1 Cell Line embryonic stem cell
18 chr15:52595200-52596000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr15:52595200-52596000 Enhancers Fetal Stomach stomach
20 chr15:52595200-52601200 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr15:52595200-52601600 Weak transcription Brain Cingulate Gyrus brain
22 chr15:52595200-52605600 Weak transcription Duodenum Mucosa Duodenum
23 chr15:52595400-52596000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
24 chr15:52595400-52596000 Enhancers HUES6 Cell Line embryonic stem cell
25 chr15:52595400-52596000 Enhancers HUES64 Cell Line embryonic stem cell
26 chr15:52595400-52596000 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
27 chr15:52595400-52596000 Enhancers Primary T helper cells PMA-I stimulated --
28 chr15:52595400-52596000 Enhancers Primary T regulatory cells fromperipheralblood blood
29 chr15:52595400-52596000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr15:52595400-52596200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr15:52595400-52605600 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr15:52595400-52610800 Weak transcription Rectal Smooth Muscle rectum
33 chr15:52595400-52614200 Weak transcription Fetal Lung lung
34 chr15:52595600-52596000 Enhancers Primary T cells fromperipheralblood blood
35 chr15:52595600-52596000 Enhancers Primary T helper 17 cells PMA-I stimulated --
36 chr15:52595600-52596000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr15:52595600-52596400 Enhancers Primary T helper naive cells fromperipheralblood blood
38 chr15:52595600-52597800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr15:52595600-52598800 Weak transcription Primary monocytes fromperipheralblood blood
40 chr15:52595600-52603400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr15:52595600-52609800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr15:52595800-52596000 Enhancers Primary neutrophils fromperipheralblood blood
43 chr15:52595800-52596000 Enhancers Primary B cells from peripheral blood blood
44 chr15:52595800-52596000 Enhancers Primary T cells from cord blood blood
45 chr15:52595800-52596000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
46 chr15:52595800-52596400 Enhancers Primary T helper cells fromperipheralblood blood
47 chr15:52595800-52596400 Enhancers NHDF-Ad bronchial
48 chr15:52595800-52597400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr15:52595800-52600800 Weak transcription Adipose Nuclei Adipose
50 chr15:52595800-52600800 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015