Variant report

Variant	rs16964903
Chromosome Location	chr15:52635457-52635458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52623951..52626940-chr15:52635253..52637194,2	MCF-7	breast:
2	chr15:52633711..52635722-chr15:52639445..52641864,2	MCF-7	breast:
3	chr15:52628575..52631429-chr15:52632660..52636715,3	MCF-7	breast:
4	chr15:52632217..52635476-chr15:52636789..52639716,4	MCF-7	breast:
5	chr15:52630806..52632782-chr15:52635293..52638490,3	K562	blood:

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10518683	1.00[GIH][hapmap]
rs10518688	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1108808	1.00[EUR][1000 genomes]
rs12101973	1.00[EUR][1000 genomes]
rs13329278	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs13329402	1.00[EUR][1000 genomes]
rs13329417	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13329500	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1669870	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1669872	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs16964891	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964910	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16964915	1.00[EUR][1000 genomes]
rs16964919	1.00[EUR][1000 genomes]
rs16964921	1.00[EUR][1000 genomes]
rs16964924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964927	1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16964928	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16964935	1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16964944	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16964952	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1724577	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1724599	0.85[GIH][hapmap];1.00[MEX][hapmap]
rs1724600	0.85[GIH][hapmap];1.00[MEX][hapmap]
rs1724602	0.85[GIH][hapmap];1.00[MEX][hapmap]
rs2222656	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs2414137	1.00[EUR][1000 genomes]
rs2414138	1.00[EUR][1000 genomes]
rs2414145	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2600903	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs2600904	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs28366864	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28367336	1.00[EUR][1000 genomes]
rs28367508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28374631	1.00[EUR][1000 genomes]
rs28409636	1.00[EUR][1000 genomes]
rs28409760	1.00[EUR][1000 genomes]
rs28415069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415472	0.80[ASN][1000 genomes]
rs28421476	0.80[ASN][1000 genomes]
rs28426997	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28444393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28462026	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28475475	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs28479614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28480975	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485251	0.80[ASN][1000 genomes]
rs28488423	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28496242	1.00[EUR][1000 genomes]
rs28499517	0.80[ASN][1000 genomes]
rs28503750	1.00[EUR][1000 genomes]
rs28508266	1.00[EUR][1000 genomes]
rs28514341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28515624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532168	1.00[EUR][1000 genomes]
rs28534436	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28538563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28552981	1.00[EUR][1000 genomes]
rs28556657	1.00[EUR][1000 genomes]
rs28564655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590330	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28594692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605633	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613360	0.80[ASN][1000 genomes]
rs28618215	0.93[ASN][1000 genomes]
rs28633243	1.00[EUR][1000 genomes]
rs28638475	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28649737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28650960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653534	1.00[EUR][1000 genomes]
rs28655190	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28660682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661501	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28663524	0.80[ASN][1000 genomes]
rs28669685	0.93[ASN][1000 genomes]
rs28682547	0.80[ASN][1000 genomes]
rs28693941	1.00[EUR][1000 genomes]
rs28697879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28729511	0.80[ASN][1000 genomes]
rs28735959	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28756182	1.00[EUR][1000 genomes]
rs4499185	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624108	1.00[EUR][1000 genomes]
rs4774620	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4774621	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4776042	0.93[ASN][1000 genomes]
rs4987194	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57864537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58029714	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58812575	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7163569	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7163778	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7164722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7164872	1.00[EUR][1000 genomes]
rs7166034	0.81[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7167181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167890	0.82[ASN][1000 genomes]
rs7167916	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7168076	1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168251	1.00[EUR][1000 genomes]
rs7169104	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7169346	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170622	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178069	1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7179156	1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7182148	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73408408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408415	1.00[EUR][1000 genomes]
rs73408465	1.00[EUR][1000 genomes]
rs73408469	1.00[EUR][1000 genomes]
rs73408478	1.00[EUR][1000 genomes]
rs73410713	1.00[EUR][1000 genomes]
rs73410715	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73410759	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7342673	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs744501	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8023623	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8024412	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027637	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027777	1.00[EUR][1000 genomes]
rs8035199	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8040369	1.00[EUR][1000 genomes]
rs8041819	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8042235	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042245	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs876549	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs935891	0.81[MKK][hapmap]
rs9744852	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs9920195	0.80[ASN][1000 genomes]
rs9920739	1.00[EUR][1000 genomes]
rs9920749	1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52597800-52643400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:52600800-52646600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:52601000-52643400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:52607800-52657800	Weak transcription	Small Intestine	intestine
5	chr15:52609800-52677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:52610000-52643400	Weak transcription	Placenta	Placenta
7	chr15:52611600-52650200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:52611800-52675800	Weak transcription	Gastric	stomach
9	chr15:52613000-52642600	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:52613600-52666600	Weak transcription	Right Ventricle	heart
11	chr15:52614800-52642600	Weak transcription	Esophagus	oesophagus
12	chr15:52614800-52653200	Weak transcription	Colonic Mucosa	Colon
13	chr15:52619800-52640600	Weak transcription	Left Ventricle	heart
14	chr15:52619800-52641200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:52620000-52652200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:52620600-52659200	Weak transcription	Fetal Lung	lung
17	chr15:52621200-52666600	Weak transcription	Fetal Brain Male	brain
18	chr15:52621800-52640200	Weak transcription	Fetal Brain Female	brain
19	chr15:52621800-52662200	Weak transcription	Psoas Muscle	Psoas
20	chr15:52622400-52636000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:52623800-52644200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:52624200-52636200	Weak transcription	Fetal Heart	heart
23	chr15:52624200-52641200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:52624400-52636600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:52624400-52636600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:52624600-52641200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:52624600-52641400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:52624600-52642400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:52627000-52646600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:52627200-52641200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:52627400-52641400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:52629400-52638000	Weak transcription	Brain Substantia Nigra	brain
33	chr15:52629800-52640600	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:52630000-52637800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:52630000-52640600	Weak transcription	Brain Anterior Caudate	brain
36	chr15:52630000-52641400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:52630000-52641600	Weak transcription	Primary T cells from cord blood	blood
38	chr15:52630200-52641400	Weak transcription	Brain Angular Gyrus	brain
39	chr15:52630200-52641400	Weak transcription	Osteobl	bone
40	chr15:52630200-52641600	Weak transcription	NHDF-Ad	bronchial
41	chr15:52630400-52636200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:52630600-52636200	Weak transcription	NH-A	brain
43	chr15:52630600-52641400	Weak transcription	Fetal Thymus	thymus
44	chr15:52630600-52684800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr15:52630800-52640200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:52631000-52638800	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:52631200-52641400	Weak transcription	HMEC	breast
48	chr15:52631600-52679200	Weak transcription	Fetal Intestine Small	intestine
49	chr15:52632200-52636600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:52632400-52636600	Weak transcription	HUVEC	blood vessel

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