The 2.0 version of rSNPBase

Variant report

Variant rs28682547
Chromosome Location chr15:52734182-52734183
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52679800-52740000 Weak transcription Spleen Spleen
2 chr15:52680800-52740200 Weak transcription Thymus Thymus
3 chr15:52697200-52738600 Weak transcription Fetal Brain Female brain
4 chr15:52702400-52737600 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr15:52721400-52737800 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr15:52721400-52739000 Weak transcription Primary B cells from cord blood blood
7 chr15:52728600-52737400 Weak transcription Psoas Muscle Psoas
8 chr15:52729000-52739400 Enhancers Primary monocytes fromperipheralblood blood
9 chr15:52729200-52734800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr15:52729800-52734800 Enhancers Adipose Nuclei Adipose
11 chr15:52730000-52734200 Enhancers Brain Cingulate Gyrus brain
12 chr15:52730000-52735600 Enhancers Brain Anterior Caudate brain
13 chr15:52730200-52734800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr15:52730400-52744600 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr15:52730600-52734200 Weak transcription GM12878-XiMat blood
16 chr15:52730600-52734400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr15:52730600-52736200 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr15:52730600-52737200 Weak transcription Right Ventricle heart
19 chr15:52730600-52739400 Weak transcription Esophagus oesophagus
20 chr15:52730600-52741600 Weak transcription Ovary ovary
21 chr15:52730600-52741600 Weak transcription HUVEC blood vessel
22 chr15:52730600-52741800 Weak transcription Gastric stomach
23 chr15:52730800-52734200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr15:52730800-52735400 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr15:52730800-52738000 Weak transcription Colon Smooth Muscle Colon
26 chr15:52730800-52741800 Weak transcription Primary B cells from peripheral blood blood
27 chr15:52731200-52734400 Weak transcription Primary T cells fromperipheralblood blood
28 chr15:52731200-52734400 Weak transcription Right Atrium heart
29 chr15:52731600-52734400 Enhancers Brain Angular Gyrus brain
30 chr15:52731600-52734400 Enhancers Brain Hippocampus Middle brain
31 chr15:52731800-52734600 Enhancers HMEC breast
32 chr15:52731800-52734800 Enhancers Brain Inferior Temporal Lobe brain
33 chr15:52732200-52734600 Enhancers Muscle Satellite Cultured Cells --
34 chr15:52732200-52734600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
35 chr15:52732200-52734600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr15:52732200-52734800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
37 chr15:52732200-52734800 Enhancers A549 lung
38 chr15:52732200-52734800 Enhancers HSMM muscle
39 chr15:52732200-52734800 Enhancers HSMMtube muscle
40 chr15:52732200-52734800 Enhancers NHEK skin
41 chr15:52732400-52734200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr15:52732400-52734600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr15:52732400-52737200 Weak transcription Left Ventricle heart
44 chr15:52732600-52734400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr15:52732600-52737200 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr15:52732600-52750600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr15:52732800-52734600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr15:52732800-52734800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr15:52733000-52734200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr15:52733000-52734400 Enhancers Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015