The 2.0 version of rSNPBase

Variant report

Variant rs28613360
Chromosome Location chr15:52700125-52700126
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52644600-52730200 Weak transcription Esophagus oesophagus
2 chr15:52663200-52711400 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr15:52663400-52708600 Strong transcription Primary monocytes fromperipheralblood blood
4 chr15:52665200-52720600 Weak transcription Pancreas Pancrea
5 chr15:52668800-52730400 Weak transcription Aorta Aorta
6 chr15:52673800-52730200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr15:52674000-52703800 Weak transcription Fetal Brain Male brain
8 chr15:52676000-52705600 Weak transcription Fetal Stomach stomach
9 chr15:52676200-52701800 Weak transcription Colon Smooth Muscle Colon
10 chr15:52676400-52701000 Weak transcription HMEC breast
11 chr15:52676400-52709800 Weak transcription NHLF lung
12 chr15:52676400-52721400 Weak transcription Gastric stomach
13 chr15:52676600-52701800 Weak transcription Right Ventricle heart
14 chr15:52676600-52706400 Weak transcription Lung lung
15 chr15:52676600-52718600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr15:52677000-52730000 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr15:52679800-52729600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr15:52679800-52740000 Weak transcription Spleen Spleen
19 chr15:52680600-52719800 Weak transcription NH-A brain
20 chr15:52680800-52716400 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr15:52680800-52730000 Weak transcription Brain Angular Gyrus brain
22 chr15:52680800-52740200 Weak transcription Thymus Thymus
23 chr15:52681000-52706800 Weak transcription Brain Substantia Nigra brain
24 chr15:52681200-52701000 Weak transcription Duodenum Mucosa Duodenum
25 chr15:52684000-52719800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr15:52684800-52701000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr15:52684800-52719800 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr15:52684800-52730000 Weak transcription Brain Hippocampus Middle brain
29 chr15:52685000-52701200 Weak transcription A549 lung
30 chr15:52685000-52717000 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr15:52685200-52701000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr15:52685400-52706200 Weak transcription H9 Cell Line embryonic stem cell
33 chr15:52685400-52711000 Weak transcription NHDF-Ad bronchial
34 chr15:52685400-52730000 Weak transcription Brain Cingulate Gyrus brain
35 chr15:52685600-52708000 Weak transcription NHEK skin
36 chr15:52687000-52700600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr15:52687000-52714800 Weak transcription Psoas Muscle Psoas
38 chr15:52687000-52715000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr15:52687200-52706200 Weak transcription H1 Cell Line embryonic stem cell
40 chr15:52689600-52707400 Weak transcription Fetal Heart heart
41 chr15:52689600-52730200 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr15:52689600-52730200 Weak transcription Left Ventricle heart
43 chr15:52689600-52730400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr15:52689800-52703000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr15:52689800-52706800 Weak transcription HSMMtube muscle
46 chr15:52690000-52700600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr15:52690000-52701000 Weak transcription GM12878-XiMat blood
48 chr15:52694000-52702800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
49 chr15:52694400-52702600 Strong transcription Primary neutrophils fromperipheralblood blood
50 chr15:52695000-52701000 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015