The 2.0 version of rSNPBase

Variant report

Variant rs12913979
Chromosome Location chr15:52670122-52670123
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52609800-52677600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr15:52611800-52675800 Weak transcription Gastric stomach
3 chr15:52630600-52684800 Weak transcription H9 Cell Line embryonic stem cell
4 chr15:52631600-52679200 Weak transcription Fetal Intestine Small intestine
5 chr15:52632600-52670400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr15:52638000-52671600 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr15:52644200-52680800 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr15:52644600-52730200 Weak transcription Esophagus oesophagus
9 chr15:52647400-52690600 Strong transcription Primary neutrophils fromperipheralblood blood
10 chr15:52649000-52687200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
11 chr15:52649600-52670600 Strong transcription Primary T helper cells fromperipheralblood blood
12 chr15:52649600-52677600 Strong transcription Primary T regulatory cells fromperipheralblood blood
13 chr15:52649800-52676400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr15:52650000-52670200 Strong transcription Primary T cells fromperipheralblood blood
15 chr15:52650000-52670400 Strong transcription HUVEC blood vessel
16 chr15:52652200-52670400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
17 chr15:52653600-52677400 Weak transcription Colonic Mucosa Colon
18 chr15:52655800-52675200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr15:52656800-52674000 Strong transcription Primary T cells from cord blood blood
20 chr15:52658400-52687200 Weak transcription Small Intestine intestine
21 chr15:52659000-52676600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr15:52659000-52676600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
23 chr15:52659200-52671800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr15:52659200-52676400 Strong transcription Stomach Smooth Muscle stomach
25 chr15:52659200-52676600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr15:52659200-52676800 Strong transcription Brain Inferior Temporal Lobe brain
27 chr15:52659200-52677000 Strong transcription Duodenum Smooth Muscle Duodenum
28 chr15:52659400-52676600 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr15:52659800-52673000 Weak transcription Fetal Kidney kidney
30 chr15:52660400-52670200 Strong transcription Fetal Brain Female brain
31 chr15:52660400-52676800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr15:52660800-52670400 Strong transcription Brain Hippocampus Middle brain
33 chr15:52661000-52676600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr15:52661200-52676600 Strong transcription Cortex derived primary cultured neurospheres brain
35 chr15:52662200-52670400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr15:52662400-52670600 Strong transcription Fetal Stomach stomach
37 chr15:52662400-52671200 Weak transcription Fetal Heart heart
38 chr15:52662600-52683600 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr15:52662600-52685000 Weak transcription Psoas Muscle Psoas
40 chr15:52663000-52675400 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr15:52663200-52671800 Strong transcription Primary B cells from peripheral blood blood
42 chr15:52663200-52711400 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr15:52663400-52708600 Strong transcription Primary monocytes fromperipheralblood blood
44 chr15:52663800-52670400 Strong transcription Brain Cingulate Gyrus brain
45 chr15:52664600-52673000 Weak transcription Fetal Lung lung
46 chr15:52665200-52720600 Weak transcription Pancreas Pancrea
47 chr15:52665400-52672000 Strong transcription A549 lung
48 chr15:52665600-52677200 Weak transcription Fetal Intestine Large intestine
49 chr15:52666000-52675600 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr15:52666400-52670200 Strong transcription Spleen Spleen

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Last update: Aug 31, 2015