The 2.0 version of rSNPBase

Variant report

Variant rs28479614
Chromosome Location chr15:52610888-52610889
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52595400-52614200 Weak transcription Fetal Lung lung
2 chr15:52595800-52628800 Weak transcription iPS-18 Cell Line embryonic stem cell
3 chr15:52596000-52611000 Weak transcription Fetal Stomach stomach
4 chr15:52596200-52623600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr15:52597800-52629600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr15:52597800-52643400 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr15:52599200-52611000 Weak transcription NHLF lung
8 chr15:52599400-52611000 Weak transcription Fetal Thymus thymus
9 chr15:52599400-52611000 Weak transcription Thymus Thymus
10 chr15:52599800-52611000 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr15:52599800-52611000 Weak transcription A549 lung
12 chr15:52600400-52611200 Weak transcription Colonic Mucosa Colon
13 chr15:52600600-52611000 Weak transcription H9 Cell Line embryonic stem cell
14 chr15:52600600-52624200 Weak transcription Liver Liver
15 chr15:52600800-52622800 Strong transcription Primary T cells fromperipheralblood blood
16 chr15:52600800-52646600 Strong transcription Primary neutrophils fromperipheralblood blood
17 chr15:52601000-52611000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr15:52601000-52622600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
19 chr15:52601000-52643400 Strong transcription Primary monocytes fromperipheralblood blood
20 chr15:52601200-52611000 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr15:52601200-52615200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr15:52601200-52622600 Strong transcription Primary T helper cells fromperipheralblood blood
23 chr15:52601400-52611000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr15:52601400-52611000 Weak transcription Right Atrium heart
25 chr15:52601400-52612200 Weak transcription Right Ventricle heart
26 chr15:52601600-52622400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
27 chr15:52601600-52622800 Strong transcription Primary T regulatory cells fromperipheralblood blood
28 chr15:52601800-52611000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr15:52601800-52611000 Weak transcription Fetal Muscle Trunk muscle
30 chr15:52601800-52616600 Strong transcription Primary B cells from cord blood blood
31 chr15:52601800-52621400 Weak transcription Psoas Muscle Psoas
32 chr15:52602000-52611000 Weak transcription Esophagus oesophagus
33 chr15:52602000-52622800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
34 chr15:52602200-52611000 Weak transcription Fetal Heart heart
35 chr15:52602200-52622600 Strong transcription Primary T helper cells PMA-I stimulated --
36 chr15:52602600-52622800 Strong transcription Primary B cells from peripheral blood blood
37 chr15:52603200-52616400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr15:52603400-52614800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr15:52603600-52611000 Weak transcription Lung lung
40 chr15:52604800-52611200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr15:52605000-52611200 Strong transcription Skeletal Muscle Female skeletal muscle
42 chr15:52605000-52615000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr15:52605200-52615000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr15:52605400-52622800 Strong transcription HSMMtube muscle
45 chr15:52605600-52611000 Weak transcription NH-A brain
46 chr15:52606000-52611200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
47 chr15:52606200-52611000 Weak transcription HMEC breast
48 chr15:52606800-52618600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
49 chr15:52607000-52611000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr15:52607000-52622800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015