The 2.0 version of rSNPBase

Variant report

Variant rs28650960
Chromosome Location chr15:52604623-52604624
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52593600-52608600 Weak transcription Fetal Brain Male brain
2 chr15:52595200-52605600 Weak transcription Duodenum Mucosa Duodenum
3 chr15:52595400-52605600 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr15:52595400-52610800 Weak transcription Rectal Smooth Muscle rectum
5 chr15:52595400-52614200 Weak transcription Fetal Lung lung
6 chr15:52595600-52609800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr15:52595800-52628800 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr15:52596000-52604800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr15:52596000-52605000 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr15:52596000-52605000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr15:52596000-52608400 Weak transcription H1 Cell Line embryonic stem cell
12 chr15:52596000-52608800 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr15:52596000-52611000 Weak transcription Fetal Stomach stomach
14 chr15:52596200-52623600 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr15:52596400-52605000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr15:52596400-52608600 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr15:52597600-52608600 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr15:52597800-52629600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr15:52597800-52643400 Strong transcription Monocytes-CD14+_RO01746 blood
20 chr15:52598400-52608400 Weak transcription Brain Hippocampus Middle brain
21 chr15:52599000-52605200 Weak transcription HMEC breast
22 chr15:52599000-52605200 Weak transcription NHEK skin
23 chr15:52599200-52605000 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr15:52599200-52611000 Weak transcription NHLF lung
25 chr15:52599400-52611000 Weak transcription Fetal Thymus thymus
26 chr15:52599400-52611000 Weak transcription Thymus Thymus
27 chr15:52599600-52605400 Weak transcription Brain Germinal Matrix brain
28 chr15:52599800-52611000 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr15:52599800-52611000 Weak transcription A549 lung
30 chr15:52600400-52607400 Weak transcription Colon Smooth Muscle Colon
31 chr15:52600400-52611200 Weak transcription Colonic Mucosa Colon
32 chr15:52600600-52611000 Weak transcription H9 Cell Line embryonic stem cell
33 chr15:52600600-52624200 Weak transcription Liver Liver
34 chr15:52600800-52622800 Strong transcription Primary T cells fromperipheralblood blood
35 chr15:52600800-52646600 Strong transcription Primary neutrophils fromperipheralblood blood
36 chr15:52601000-52606800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr15:52601000-52608600 Weak transcription Brain Anterior Caudate brain
38 chr15:52601000-52610000 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr15:52601000-52611000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr15:52601000-52622600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
41 chr15:52601000-52643400 Strong transcription Primary monocytes fromperipheralblood blood
42 chr15:52601200-52606400 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr15:52601200-52611000 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr15:52601200-52615200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr15:52601200-52622600 Strong transcription Primary T helper cells fromperipheralblood blood
46 chr15:52601400-52605400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr15:52601400-52606000 Strong transcription Fetal Brain Female brain
48 chr15:52601400-52609800 Weak transcription Gastric stomach
49 chr15:52601400-52611000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr15:52601400-52611000 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015