Variant report

Variant	rs28617628
Chromosome Location	chr15:52598260-52598261
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52594481..52597442-chr15:52597861..52600485,2	K562	blood:
2	chr15:52549166..52552176-chr15:52598023..52601011,3	MCF-7	breast:
3	chr15:52592179..52594075-chr15:52597394..52599808,3	MCF-7	breast:
4	chr15:52591772..52593898-chr15:52597289..52599188,2	MCF-7	breast:
5	chr15:52597021..52599373-chr15:52645186..52647401,2	MCF-7	breast:
6	chr15:52597059..52600522-chr15:52602504..52605228,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13329087	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28366864	1.00[AFR][1000 genomes]
rs28415069	1.00[AFR][1000 genomes]
rs28488423	1.00[AFR][1000 genomes]
rs28515624	1.00[AFR][1000 genomes]
rs28534436	1.00[AFR][1000 genomes]
rs28552981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28648824	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28649737	1.00[AFR][1000 genomes]
rs28743026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28787300	1.00[AMR][1000 genomes]
rs60871316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7165061	1.00[AMR][1000 genomes]
rs73406652	1.00[AMR][1000 genomes]
rs73406667	1.00[AMR][1000 genomes]
rs73406680	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52588200-52602200	Weak transcription	HSMM	muscle
2	chr15:52588400-52598400	Weak transcription	HMEC	breast
3	chr15:52588400-52602800	Weak transcription	Aorta	Aorta
4	chr15:52589000-52598400	Weak transcription	A549	lung
5	chr15:52591000-52601000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:52591200-52602400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:52593400-52598400	Weak transcription	Osteobl	bone
8	chr15:52593600-52608600	Weak transcription	Fetal Brain Male	brain
9	chr15:52594400-52601200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:52595000-52600800	Weak transcription	Pancreas	Pancrea
11	chr15:52595200-52601200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:52595200-52601600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:52595200-52605600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:52595400-52605600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:52595400-52610800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:52595400-52614200	Weak transcription	Fetal Lung	lung
17	chr15:52595600-52598800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:52595600-52603400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:52595600-52609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:52595800-52600800	Weak transcription	Adipose Nuclei	Adipose
21	chr15:52595800-52600800	Weak transcription	Spleen	Spleen
22	chr15:52595800-52601000	Weak transcription	Ovary	ovary
23	chr15:52595800-52601200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:52595800-52601600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:52595800-52602000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:52595800-52628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:52596000-52600000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr15:52596000-52600800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:52596000-52600800	Weak transcription	Primary T cells from cord blood	blood
30	chr15:52596000-52600800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:52596000-52601000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:52596000-52601600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:52596000-52601600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:52596000-52602200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:52596000-52603000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:52596000-52604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:52596000-52605000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:52596000-52605000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:52596000-52608400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:52596000-52608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:52596000-52611000	Weak transcription	Fetal Stomach	stomach
42	chr15:52596200-52601400	Weak transcription	Fetal Brain Female	brain
43	chr15:52596200-52602800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:52596200-52623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:52596400-52598600	Weak transcription	NHDF-Ad	bronchial
46	chr15:52596400-52601200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:52596400-52605000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:52596400-52608600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr15:52597200-52600400	Weak transcription	Primary B cells from cord blood	blood
50	chr15:52597600-52599200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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