The 2.0 version of rSNPBase

Variant report

Variant rs73406680
Chromosome Location chr15:52602395-52602396
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52588400-52602800 Weak transcription Aorta Aorta
2 chr15:52591200-52602400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr15:52593600-52608600 Weak transcription Fetal Brain Male brain
4 chr15:52595200-52605600 Weak transcription Duodenum Mucosa Duodenum
5 chr15:52595400-52605600 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr15:52595400-52610800 Weak transcription Rectal Smooth Muscle rectum
7 chr15:52595400-52614200 Weak transcription Fetal Lung lung
8 chr15:52595600-52603400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr15:52595600-52609800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr15:52595800-52628800 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr15:52596000-52603000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr15:52596000-52604800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr15:52596000-52605000 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr15:52596000-52605000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr15:52596000-52608400 Weak transcription H1 Cell Line embryonic stem cell
16 chr15:52596000-52608800 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr15:52596000-52611000 Weak transcription Fetal Stomach stomach
18 chr15:52596200-52602800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr15:52596200-52623600 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr15:52596400-52605000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr15:52596400-52608600 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr15:52597600-52608600 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr15:52597800-52629600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr15:52597800-52643400 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr15:52598200-52602800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr15:52598400-52608400 Weak transcription Brain Hippocampus Middle brain
27 chr15:52598800-52602800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr15:52598800-52604400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr15:52599000-52605200 Weak transcription HMEC breast
30 chr15:52599000-52605200 Weak transcription NHEK skin
31 chr15:52599200-52602800 Weak transcription Brain Substantia Nigra brain
32 chr15:52599200-52605000 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr15:52599200-52611000 Weak transcription NHLF lung
34 chr15:52599400-52611000 Weak transcription Fetal Thymus thymus
35 chr15:52599400-52611000 Weak transcription Thymus Thymus
36 chr15:52599600-52605400 Weak transcription Brain Germinal Matrix brain
37 chr15:52599800-52611000 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr15:52599800-52611000 Weak transcription A549 lung
39 chr15:52600400-52602400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr15:52600400-52607400 Weak transcription Colon Smooth Muscle Colon
41 chr15:52600400-52611200 Weak transcription Colonic Mucosa Colon
42 chr15:52600600-52603200 Weak transcription Brain Angular Gyrus brain
43 chr15:52600600-52611000 Weak transcription H9 Cell Line embryonic stem cell
44 chr15:52600600-52624200 Weak transcription Liver Liver
45 chr15:52600800-52603000 Enhancers NHDF-Ad bronchial
46 chr15:52600800-52603800 Strong transcription Primary T cells from cord blood blood
47 chr15:52600800-52622800 Strong transcription Primary T cells fromperipheralblood blood
48 chr15:52600800-52646600 Strong transcription Primary neutrophils fromperipheralblood blood
49 chr15:52601000-52602600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
50 chr15:52601000-52603600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015