Variant report

Variant	rs10444856
Chromosome Location	chr15:76232422-76232423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76225604..76228102-chr15:76229975..76232639,2	MCF-7	breast:
2	chr15:76231213..76235489-chr15:76235646..76238510,7	K562	blood:
3	chr15:76230088..76234622-chr15:76234992..76238934,7	K562	blood:
4	chr15:76228613..76230905-chr15:76232150..76235048,3	MCF-7	breast:
5	chr15:76230095..76231887-chr15:76232023..76234158,2	K562	blood:

Variant related genes	Relation type
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10851884	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11072562	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072566	0.92[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11072567	0.89[EUR][1000 genomes]
rs11636251	0.96[CEU][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12437816	1.00[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12593806	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1874953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1976748	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2047866	0.80[EUR][1000 genomes]
rs2088599	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2201917	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28525382	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28550045	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28607641	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335685	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886466	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4886748	0.96[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4886755	0.96[CEU][hapmap];0.86[YRI][hapmap];0.89[EUR][1000 genomes]
rs7177266	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8027685	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
4	chr15:76217600-76232600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:76222800-76233200	Strong transcription	NH-A	brain
6	chr15:76223600-76236200	Weak transcription	Fetal Heart	heart
7	chr15:76224800-76233000	Weak transcription	Fetal Intestine Small	intestine
8	chr15:76224800-76233400	Strong transcription	A549	lung
9	chr15:76225200-76232600	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:76226400-76236600	Weak transcription	Stomach Mucosa	stomach
11	chr15:76226600-76238600	Weak transcription	NHLF	lung
12	chr15:76226800-76232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:76226800-76232800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:76226800-76233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:76226800-76234600	Weak transcription	Adipose Nuclei	Adipose
16	chr15:76226800-76235000	Weak transcription	Fetal Kidney	kidney
17	chr15:76227000-76232600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:76227000-76233400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:76227000-76234000	Weak transcription	HepG2	liver
20	chr15:76227800-76233000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:76227800-76236000	Weak transcription	Osteobl	bone
22	chr15:76228000-76233000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:76228000-76233200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr15:76228000-76234600	Weak transcription	Primary B cells from cord blood	blood
25	chr15:76228000-76235600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:76228000-76235600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:76228200-76233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:76228200-76234000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:76228200-76239600	Weak transcription	Fetal Brain Female	brain
30	chr15:76228400-76236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:76229400-76232600	Strong transcription	HMEC	breast
32	chr15:76229800-76232600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:76230000-76232800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:76230000-76233600	Strong transcription	HSMM	muscle
35	chr15:76230400-76234000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:76230400-76236000	Weak transcription	NHEK	skin
37	chr15:76230400-76236200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:76230400-76236600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:76230600-76233200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:76230600-76233200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:76230600-76233800	Weak transcription	Fetal Intestine Large	intestine
42	chr15:76230600-76236000	Weak transcription	HSMMtube	muscle
43	chr15:76230600-76238600	Weak transcription	Left Ventricle	heart
44	chr15:76230600-76239400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:76230600-76244400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:76230800-76238200	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr15:76230800-76246400	Weak transcription	Hela-S3	cervix
48	chr15:76231000-76239000	Weak transcription	Fetal Brain Male	brain
49	chr15:76231200-76234400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:76231200-76234600	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links