Variant report

Variant	rs11072562
Chromosome Location	chr15:76191569-76191570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76185756..76188728-chr15:76191181..76193315,3	K562	blood:
2	chr15:76190676..76192900-chr15:76194789..76197660,2	K562	blood:
3	chr15:76133759..76137601-chr15:76188038..76192519,6	MCF-7	breast:
4	chr15:76172140..76173726-chr15:76190958..76192961,2	K562	blood:
5	chr15:76135100..76137352-chr15:76191010..76193269,2	MCF-7	breast:
6	chr15:76188987..76192900-chr15:76194708..76196784,3	K562	blood:
7	chr15:76190464..76192251-chr15:76192564..76194380,2	K562	blood:

Variant related genes	Relation type
ENSG00000266308	Chromatin interaction
ENSG00000140367	Chromatin interaction
ENSG00000167196	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10444856	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10851884	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11072566	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11072567	0.82[EUR][1000 genomes]
rs12437816	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12593806	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1874953	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1976748	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2047866	0.90[EUR][1000 genomes]
rs2201917	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28525382	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28550045	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28607641	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs335685	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886466	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4886748	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4886755	0.82[EUR][1000 genomes]
rs7177266	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
6	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:76165600-76194800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:76166400-76193600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:76166400-76194600	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:76166400-76195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:76166400-76195400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:76166400-76195800	Weak transcription	Gastric	stomach
14	chr15:76166600-76194400	Weak transcription	Right Ventricle	heart
15	chr15:76166600-76195200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:76166600-76195400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:76166600-76195800	Weak transcription	Aorta	Aorta
18	chr15:76166800-76195400	Weak transcription	Fetal Intestine Small	intestine
19	chr15:76167000-76194400	Weak transcription	Spleen	Spleen
20	chr15:76167000-76195600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:76167000-76195800	Weak transcription	Esophagus	oesophagus
22	chr15:76167200-76193800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:76167200-76195200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:76167200-76195600	Weak transcription	Lung	lung
25	chr15:76167600-76195400	Weak transcription	Brain Angular Gyrus	brain
26	chr15:76168200-76195000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:76172000-76195200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:76172200-76192400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:76172200-76194600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:76172200-76195600	Weak transcription	Fetal Intestine Large	intestine
31	chr15:76172400-76193000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:76172400-76193600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:76172400-76193600	Weak transcription	Brain Germinal Matrix	brain
34	chr15:76172400-76195200	Weak transcription	Left Ventricle	heart
35	chr15:76172400-76195600	Weak transcription	Ovary	ovary
36	chr15:76176600-76195400	Weak transcription	Fetal Brain Male	brain
37	chr15:76177000-76195200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:76177800-76194600	Weak transcription	Thymus	Thymus
39	chr15:76178200-76195200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:76178200-76195200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:76179200-76193800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:76180000-76195800	Weak transcription	Small Intestine	intestine
43	chr15:76180200-76195200	Weak transcription	Pancreas	Pancrea
44	chr15:76180800-76194200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:76181400-76192400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:76183400-76191600	Weak transcription	Placenta	Placenta
47	chr15:76184400-76192800	Weak transcription	HepG2	liver
48	chr15:76184400-76194200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:76184400-76194400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:76184400-76194400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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