Variant report

Variant	rs10445103
Chromosome Location	chr16:82840529-82840530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82838532..82841265-chr16:82844045..82845845,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12050942	0.81[ASN][1000 genomes]
rs12050982	0.89[ASN][1000 genomes]
rs12050990	0.93[ASN][1000 genomes]
rs12051538	0.86[ASN][1000 genomes]
rs12051540	0.92[ASN][1000 genomes]
rs4277336	0.86[ASN][1000 genomes]
rs4598906	0.86[ASN][1000 genomes]
rs55905499	0.83[ASN][1000 genomes]
rs56306839	0.84[ASN][1000 genomes]
rs8057489	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2751616	chr16:82714696-82852296	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1066132	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv543001	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv907027	chr16:82830121-82871350	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82823600-82858000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr16:82829400-82856600	Weak transcription	NHEK	skin
3	chr16:82833000-82873600	Weak transcription	HMEC	breast
4	chr16:82833600-82848600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:82835600-82845800	Weak transcription	HUVEC	blood vessel
6	chr16:82836000-82841200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:82836400-82841800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:82836600-82848800	Weak transcription	HSMM	muscle
9	chr16:82839400-82841000	Enhancers	Fetal Brain Female	brain
10	chr16:82839400-82856400	Weak transcription	Left Ventricle	heart
11	chr16:82839600-82840600	Enhancers	Aorta	Aorta
12	chr16:82839600-82845400	Weak transcription	Psoas Muscle	Psoas
13	chr16:82839800-82842200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr16:82839800-82862600	Weak transcription	HSMMtube	muscle
15	chr16:82840000-82841800	Enhancers	Brain Hippocampus Middle	brain
16	chr16:82840200-82840600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:82840200-82840800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr16:82840200-82840800	Enhancers	Brain Cingulate Gyrus	brain
19	chr16:82840200-82841400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr16:82840200-82842400	Enhancers	Brain Substantia Nigra	brain
21	chr16:82840400-82841200	Enhancers	Brain Anterior Caudate	brain
22	chr16:82840400-82841200	Enhancers	Fetal Brain Male	brain

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