Variant report

Variant	rs10445430
Chromosome Location	chr18:13255629-13255630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13219840..13222499-chr18:13254557..13256309,2	MCF-7	breast:
2	chr18:13217260..13220397-chr18:13252163..13256866,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10445419	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10445429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11080639	0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs11659870	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11661574	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11662617	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11665438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55809306	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6505792	0.83[ASN][1000 genomes]
rs9652933	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13223800-13259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr18:13224000-13259800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr18:13224400-13259800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr18:13233000-13260200	Weak transcription	Colonic Mucosa	Colon
5	chr18:13233400-13259000	Weak transcription	Primary T cells from cord blood	blood
6	chr18:13236200-13258800	Weak transcription	Fetal Lung	lung
7	chr18:13237400-13258800	Weak transcription	Adipose Nuclei	Adipose
8	chr18:13237400-13258800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr18:13237800-13258800	Weak transcription	Colon Smooth Muscle	Colon
10	chr18:13239600-13255800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr18:13240200-13256000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr18:13243200-13260200	Weak transcription	Aorta	Aorta
13	chr18:13243600-13278200	Weak transcription	Dnd41	blood
14	chr18:13246600-13256200	Weak transcription	Psoas Muscle	Psoas
15	chr18:13248400-13259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr18:13252400-13257000	Enhancers	Fetal Heart	heart
17	chr18:13252600-13257000	Strong transcription	Thymus	Thymus
18	chr18:13252800-13256200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:13253000-13256400	Weak transcription	Fetal Muscle Leg	muscle
20	chr18:13253000-13267800	Weak transcription	Gastric	stomach
21	chr18:13253200-13257400	Weak transcription	Esophagus	oesophagus
22	chr18:13253200-13259000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr18:13253200-13259800	Weak transcription	Brain Substantia Nigra	brain
24	chr18:13253200-13260000	Weak transcription	Brain Angular Gyrus	brain
25	chr18:13253400-13256200	Weak transcription	Brain Anterior Caudate	brain
26	chr18:13253400-13257400	Weak transcription	Lung	lung
27	chr18:13253400-13258800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr18:13253600-13255800	Weak transcription	Brain Germinal Matrix	brain
29	chr18:13253600-13258800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr18:13253600-13259000	Weak transcription	Brain Hippocampus Middle	brain
31	chr18:13253800-13256800	Enhancers	Right Ventricle	heart
32	chr18:13254200-13256600	Weak transcription	Right Atrium	heart
33	chr18:13254200-13259800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr18:13254200-13260200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr18:13254400-13259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr18:13254600-13258800	Weak transcription	Left Ventricle	heart
37	chr18:13254600-13259800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr18:13254600-13259800	Weak transcription	Small Intestine	intestine
39	chr18:13255400-13256000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr18:13255400-13256600	Enhancers	Fetal Brain Male	brain
41	chr18:13255400-13257200	Enhancers	Fetal Brain Female	brain
42	chr18:13255600-13255800	Genic enhancers	Fetal Thymus	thymus

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