Variant report

Variant	rs10446323
Chromosome Location	chr3:143068277-143068278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143067407..143070275-chr3:143070777..143072704,2	K562	blood:
2	chr3:143067819..143069970-chr3:143072311..143075469,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10446322	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1501630	0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4839589	0.83[EUR][1000 genomes]
rs4839590	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799800	0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7431032	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7431637	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143063600-143076400	Weak transcription	Brain Anterior Caudate	brain
2	chr3:143064400-143068400	Enhancers	Dnd41	blood
3	chr3:143064600-143070800	Weak transcription	Ovary	ovary
4	chr3:143066000-143069000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:143066200-143069200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:143066400-143068400	Enhancers	Fetal Thymus	thymus
7	chr3:143066400-143068600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:143066400-143068800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:143066600-143068600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:143066800-143068400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:143066800-143069000	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:143066800-143069000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr3:143067000-143069200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:143067200-143069400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:143067400-143068600	Enhancers	GM12878-XiMat	blood
16	chr3:143067400-143068800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:143067600-143068800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr3:143067600-143069200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:143067800-143068400	Enhancers	Primary hematopoietic stem cells	blood
20	chr3:143068000-143069000	Enhancers	Primary T cells from cord blood	blood
21	chr3:143068000-143069200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr3:143068000-143071600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr3:143068000-143072000	Weak transcription	Placenta	Placenta
24	chr3:143068200-143070400	Weak transcription	Primary B cells from cord blood	blood
25	chr3:143068200-143071600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:143068200-143071800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:143068200-143078400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:143068200-143091800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links