Variant report

Variant	rs7431032
Chromosome Location	chr3:143048609-143048610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143047507..143050166-chr3:143127472..143129524,2	K562	blood:
2	chr3:142839696..142842108-chr3:143048440..143050143,2	K562	blood:
3	chr3:143047197..143050151-chr3:143065282..143067644,2	K562	blood:
4	chr3:143046217..143048916-chr3:143050759..143052463,2	K562	blood:
5	chr3:143043771..143046677-chr3:143047093..143049794,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10446322	0.91[ASN][1000 genomes]
rs10446323	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10446324	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1501630	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4839590	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6799800	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7431637	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143045600-143050600	Enhancers	Fetal Lung	lung
2	chr3:143046600-143050000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:143046600-143050400	Enhancers	Fetal Kidney	kidney
4	chr3:143046600-143051800	Weak transcription	Dnd41	blood
5	chr3:143046600-143056200	Weak transcription	Primary T cells from cord blood	blood
6	chr3:143046800-143048800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:143047200-143050800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:143047400-143049000	Enhancers	K562	blood
9	chr3:143047400-143049200	Enhancers	Spleen	Spleen
10	chr3:143047400-143050200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:143047400-143050200	Enhancers	Fetal Brain Female	brain
12	chr3:143047600-143049200	Enhancers	Fetal Thymus	thymus
13	chr3:143047600-143051200	Enhancers	NHDF-Ad	bronchial
14	chr3:143047800-143050800	Enhancers	Fetal Brain Male	brain
15	chr3:143048000-143048800	Enhancers	Brain Angular Gyrus	brain
16	chr3:143048000-143049000	Bivalent Enhancer	Placenta	Placenta
17	chr3:143048200-143049000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
18	chr3:143048200-143049000	Enhancers	Psoas Muscle	Psoas
19	chr3:143048200-143049200	Enhancers	Fetal Muscle Trunk	muscle
20	chr3:143048400-143048800	Enhancers	Esophagus	oesophagus
21	chr3:143048400-143048800	Bivalent Enhancer	Fetal Stomach	stomach
22	chr3:143048400-143048800	Enhancers	Lung	lung
23	chr3:143048400-143049000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:143048400-143049000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:143048400-143049200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:143048400-143049200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:143048400-143049200	Enhancers	Ovary	ovary
28	chr3:143048400-143049400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:143048400-143049600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr3:143048400-143049600	Enhancers	Liver	Liver
31	chr3:143048400-143051200	Enhancers	Fetal Muscle Leg	muscle
32	chr3:143048400-143051200	Enhancers	HUVEC	blood vessel
33	chr3:143048600-143048800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr3:143048600-143048800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:143048600-143048800	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr3:143048600-143048800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
37	chr3:143048600-143048800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
38	chr3:143048600-143049000	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr3:143048600-143049000	Bivalent Enhancer	Fetal Intestine Large	intestine
40	chr3:143048600-143049000	Bivalent Enhancer	Fetal Intestine Small	intestine
41	chr3:143048600-143049000	Enhancers	Left Ventricle	heart
42	chr3:143048600-143049000	Enhancers	Right Atrium	heart
43	chr3:143048600-143049000	Enhancers	NH-A	brain
44	chr3:143048600-143049200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:143048600-143049200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr3:143048600-143049200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:143048600-143049200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr3:143048600-143049200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:143048600-143049200	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr3:143048600-143049400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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