Variant report

Variant	rs10450971
Chromosome Location	chr15:45529163-45529164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45525902..45527824-chr15:45528206..45530884,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12440127	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12898733	0.98[ASN][1000 genomes]
rs1611896	0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1617207	0.84[ASN][1000 genomes]
rs1625404	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1625779	0.86[ASN][1000 genomes]
rs1628717	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1632144	0.86[ASN][1000 genomes]
rs1648280	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1648284	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1648288	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1648290	0.86[ASN][1000 genomes]
rs1648291	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1648292	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1648296	0.98[ASN][1000 genomes]
rs1648297	0.88[ASN][1000 genomes]
rs1648298	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1648299	0.94[ASN][1000 genomes]
rs1648300	0.94[ASN][1000 genomes]
rs1648301	0.94[ASN][1000 genomes]
rs1648314	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1648315	0.85[ASN][1000 genomes]
rs1706819	0.86[ASN][1000 genomes]
rs1706823	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1706828	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1706833	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1706836	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2413777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458238	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2458240	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2458241	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2467839	0.85[ASN][1000 genomes]
rs2668738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2668750	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2899376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58701250	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7167481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732622	0.91[ASN][1000 genomes]
rs938130	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	esv3450020	chr15:45527088-45535134	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45525600-45529200	Weak transcription	Fetal Heart	heart
2	chr15:45529000-45529200	ZNF genes & repeats	Left Ventricle	heart

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