Variant report

Variant	rs1648288
Chromosome Location	chr15:45506174-45506175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45458183..45461229-chr15:45504288..45506472,3	K562	blood:
2	chr15:45491035..45492770-chr15:45505625..45508217,2	K562	blood:

Variant related genes	Relation type
ENSG00000259539	Chromatin interaction
ENSG00000259932	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10450971	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12440127	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12898733	0.92[ASN][1000 genomes]
rs1611896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1617207	0.89[ASN][1000 genomes]
rs1625404	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1625779	0.91[ASN][1000 genomes]
rs1628717	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1632144	0.91[ASN][1000 genomes]
rs1648280	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1648284	0.92[ASN][1000 genomes]
rs1648290	0.91[ASN][1000 genomes]
rs1648291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648292	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1648296	0.92[ASN][1000 genomes]
rs1648297	0.83[ASN][1000 genomes]
rs1648298	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1648299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648314	0.91[ASN][1000 genomes]
rs1648315	0.90[ASN][1000 genomes]
rs1706819	0.91[ASN][1000 genomes]
rs1706823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1706828	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1706833	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1706836	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2413777	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2458238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2458240	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2458241	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2467839	0.91[ASN][1000 genomes]
rs2668738	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2668750	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899376	0.94[ASN][1000 genomes]
rs2899377	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4775824	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58701250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7167481	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs732622	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs938130	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv904187	chr15:45438537-45507738	Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
6	nsv977712	chr15:45501081-45515127	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45493600-45508000	Weak transcription	Right Atrium	heart
2	chr15:45505200-45513400	Weak transcription	Stomach Mucosa	stomach

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