Variant report

Variant	rs10452278
Chromosome Location	chr4:174286930-174286931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr4:174286825-174287013	K562	blood:	n/a	n/a
2	MAZ	chr4:174286914-174286932	GM12878	blood:	n/a	n/a
3	POLR2A	chr4:174286681-174287217	GM12878	blood:	n/a	n/a
4	POLR2A	chr4:174286898-174286984	MCF-7	breast:	n/a	n/a
5	MYC	chr4:174286919-174287029	MCF-7	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174252933..174259053-chr4:174284716..174299463,25	MCF-7	breast:
2	chr4:174284921..174287326-chr4:174290138..174292556,4	K562	blood:
3	chr4:174283818..174287326-chr4:174290138..174292589,3	K562	blood:
4	chr4:174281901..174284165-chr4:174286721..174288265,2	K562	blood:
5	chr4:174285324..174288488-chr4:174290409..174292288,3	MCF-7	breast:
6	chr4:174250771..174257645-chr4:174286907..174294441,15	MCF-7	breast:
7	chr4:174248778..174262653-chr4:174278408..174298501,82	K562	blood:
8	chr4:174245727..174260507-chr4:174283013..174295498,65	K562	blood:

No data

Variant related genes	Relation type
SAP30	TF binding region
ENSG00000164104	Chromatin interaction
ENSG00000248774	Chromatin interaction
ENSG00000164105	Chromatin interaction
ENSG00000272870	Chromatin interaction

rs_ID	r²[population]
rs57706796	1.00[AMR][1000 genomes]
rs58464099	1.00[AMR][1000 genomes]
rs59268445	1.00[AMR][1000 genomes]
rs59911479	1.00[AMR][1000 genomes]
rs6840188	1.00[AMR][1000 genomes]
rs6840823	1.00[AMR][1000 genomes]
rs73872510	1.00[AMR][1000 genomes]
rs73872515	1.00[AMR][1000 genomes]
rs73872523	1.00[AMR][1000 genomes]
rs73872525	1.00[AMR][1000 genomes]
rs73872527	1.00[AMR][1000 genomes]
rs73872536	1.00[AMR][1000 genomes]
rs73872544	1.00[AMR][1000 genomes]
rs73872546	1.00[AMR][1000 genomes]
rs73872558	1.00[AMR][1000 genomes]
rs73872567	1.00[AMR][1000 genomes]
rs73872574	1.00[AMR][1000 genomes]

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
2	chr4:174277600-174289200	Weak transcription	Fetal Brain Female	brain
3	chr4:174279000-174288200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:174279000-174290200	Weak transcription	Ovary	ovary
5	chr4:174282400-174290400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:174285600-174290200	Weak transcription	Fetal Lung	lung
7	chr4:174286200-174287400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:174286200-174288600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:174286600-174287600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:174286600-174287600	Enhancers	Fetal Thymus	thymus
11	chr4:174286600-174288200	Enhancers	HUVEC	blood vessel
12	chr4:174286600-174288400	Enhancers	Dnd41	blood
13	chr4:174286600-174289400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr4:174286600-174289600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:174286800-174287000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:174286800-174287000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr4:174286800-174287000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:174286800-174287000	ZNF genes & repeats	Aorta	Aorta
19	chr4:174286800-174287000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr4:174286800-174287000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:174286800-174287000	Enhancers	Stomach Mucosa	stomach
22	chr4:174286800-174287200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr4:174286800-174287200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:174286800-174287200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr4:174286800-174287200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:174286800-174287200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:174286800-174287200	Enhancers	Brain Anterior Caudate	brain
28	chr4:174286800-174287200	Enhancers	Right Atrium	heart
29	chr4:174286800-174287200	Enhancers	Spleen	Spleen
30	chr4:174286800-174287200	Enhancers	HMEC	breast
31	chr4:174286800-174287200	Enhancers	NHEK	skin
32	chr4:174286800-174287400	Enhancers	Primary T cells from cord blood	blood
33	chr4:174286800-174287400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr4:174286800-174287600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:174286800-174287600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:174286800-174287600	Enhancers	Gastric	stomach
37	chr4:174286800-174287600	Enhancers	Left Ventricle	heart
38	chr4:174286800-174287600	Enhancers	Right Ventricle	heart
39	chr4:174286800-174287600	Enhancers	K562	blood
40	chr4:174286800-174287800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:174286800-174288000	Enhancers	GM12878-XiMat	blood
42	chr4:174286800-174288400	Enhancers	Brain Germinal Matrix	brain
43	chr4:174286800-174289200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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