Variant report

Variant	rs73872558
Chromosome Location	chr4:174241765-174241766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174237784..174242506-chr4:174245786..174248825,4	MCF-7	breast:
2	chr4:174240982..174243911-chr4:174245243..174249082,5	MCF-7	breast:
3	chr4:174238040..174240493-chr4:174240983..174243093,2	K562	blood:
4	chr4:174235911..174241843-chr4:174252129..174256843,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10452278	1.00[AMR][1000 genomes]
rs57706796	1.00[AMR][1000 genomes]
rs58464099	1.00[AMR][1000 genomes]
rs59268445	1.00[AMR][1000 genomes]
rs59911479	1.00[AMR][1000 genomes]
rs6840188	1.00[AMR][1000 genomes]
rs6840823	1.00[AMR][1000 genomes]
rs73872510	1.00[AMR][1000 genomes]
rs73872515	1.00[AMR][1000 genomes]
rs73872523	1.00[AMR][1000 genomes]
rs73872525	1.00[AMR][1000 genomes]
rs73872527	1.00[AMR][1000 genomes]
rs73872536	1.00[AMR][1000 genomes]
rs73872544	1.00[AMR][1000 genomes]
rs73872546	1.00[AMR][1000 genomes]
rs73872567	1.00[AMR][1000 genomes]
rs73872574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
2	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
7	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
8	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:174222400-174246800	Weak transcription	Fetal Lung	lung
10	chr4:174222800-174253000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:174223400-174250600	Strong transcription	Dnd41	blood
12	chr4:174223400-174251600	Strong transcription	Fetal Thymus	thymus
13	chr4:174223600-174250400	Weak transcription	Hela-S3	cervix
14	chr4:174225200-174250800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:174226800-174242200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:174229000-174249200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:174229200-174251400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:174229200-174252400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:174229200-174253200	Weak transcription	Small Intestine	intestine
20	chr4:174229800-174247600	Weak transcription	NH-A	brain
21	chr4:174230800-174249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:174231200-174254000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:174232400-174244000	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr4:174233600-174249600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:174233800-174246000	Weak transcription	A549	lung
26	chr4:174235200-174244400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:174235600-174253000	Weak transcription	Fetal Brain Female	brain
28	chr4:174235600-174253200	Weak transcription	Colonic Mucosa	Colon
29	chr4:174236000-174253800	Weak transcription	Right Ventricle	heart
30	chr4:174236400-174253200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr4:174236600-174249400	Weak transcription	Brain Substantia Nigra	brain
32	chr4:174236600-174250600	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:174237000-174250600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:174237200-174242000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:174237200-174242800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:174237400-174254200	Weak transcription	Ovary	ovary
37	chr4:174237600-174242000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:174237600-174242000	Weak transcription	Adipose Nuclei	Adipose
39	chr4:174237600-174242000	Weak transcription	Fetal Muscle Leg	muscle
40	chr4:174237600-174243400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:174237600-174246800	Weak transcription	Spleen	Spleen
42	chr4:174237600-174253200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr4:174237600-174254000	Weak transcription	Esophagus	oesophagus
44	chr4:174237600-174254400	Weak transcription	Pancreas	Pancrea
45	chr4:174237800-174242000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:174237800-174249400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:174237800-174253200	Weak transcription	Gastric	stomach
48	chr4:174238000-174241800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr4:174238200-174242000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr4:174238200-174242000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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