Variant report
| Variant | rs10454864 |
|---|---|
| Chromosome Location | chr5:41056370-41056371 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:41052154..41054968-chr5:41055599..41057506,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10051000 | 0.81[ASN][1000 genomes] |
| rs1023840 | 0.86[CHB][hapmap];0.86[CHD][hapmap] |
| rs111000 | 0.81[ASN][1000 genomes] |
| rs13155376 | 0.86[CHB][hapmap] |
| rs13161475 | 0.95[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs13179665 | 0.81[ASN][1000 genomes] |
| rs13183645 | 0.81[ASN][1000 genomes] |
| rs1423393 | 0.92[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1423399 | 0.81[ASN][1000 genomes] |
| rs1423400 | 0.81[ASN][1000 genomes] |
| rs1423414 | 0.81[ASN][1000 genomes] |
| rs1423417 | 0.81[ASN][1000 genomes] |
| rs1593037 | 0.81[ASN][1000 genomes] |
| rs186573 | 0.80[ASN][1000 genomes] |
| rs325811 | 0.81[ASN][1000 genomes] |
| rs325812 | 0.81[ASN][1000 genomes] |
| rs325814 | 0.81[ASN][1000 genomes] |
| rs325815 | 0.81[ASN][1000 genomes] |
| rs325880 | 0.83[ASN][1000 genomes] |
| rs325881 | 0.83[ASN][1000 genomes] |
| rs34319315 | 0.83[ASN][1000 genomes] |
| rs366342 | 0.83[ASN][1000 genomes] |
| rs3805711 | 0.81[ASN][1000 genomes] |
| rs3805712 | 0.81[ASN][1000 genomes] |
| rs407399 | 0.83[ASN][1000 genomes] |
| rs4957370 | 0.93[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs5024275 | 0.81[ASN][1000 genomes] |
| rs72751687 | 0.83[ASN][1000 genomes] |
| rs72753965 | 0.81[ASN][1000 genomes] |
| rs9716828 | 0.83[ASN][1000 genomes] |
| rs9764586 | 0.87[LWK][hapmap];0.92[MKK][hapmap] |
| rs993153 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830268 | chr5:40897361-41138366 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
