Variant report

Variant	rs13155376
Chromosome Location	chr5:41064215-41064216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10051000	0.90[ASN][1000 genomes]
rs1014588	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1023840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10454864	0.86[CHB][hapmap]
rs111000	0.90[ASN][1000 genomes]
rs11958837	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11959515	0.94[CEU][hapmap];0.82[JPT][hapmap]
rs13161475	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13179665	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13183645	0.90[ASN][1000 genomes]
rs13185161	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1423393	0.96[ASN][1000 genomes]
rs1423396	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1423399	0.90[ASN][1000 genomes]
rs1423400	0.90[ASN][1000 genomes]
rs1423414	0.90[ASN][1000 genomes]
rs1423417	0.90[ASN][1000 genomes]
rs1593037	0.90[ASN][1000 genomes]
rs186573	0.89[ASN][1000 genomes]
rs325811	0.90[ASN][1000 genomes]
rs325812	0.90[ASN][1000 genomes]
rs325814	0.90[ASN][1000 genomes]
rs325815	0.90[ASN][1000 genomes]
rs325880	0.92[ASN][1000 genomes]
rs325881	0.92[ASN][1000 genomes]
rs34319315	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36091790	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs366342	0.92[ASN][1000 genomes]
rs3805711	0.90[ASN][1000 genomes]
rs3805712	0.90[ASN][1000 genomes]
rs3805716	0.94[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs407399	0.92[ASN][1000 genomes]
rs4440413	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4957370	0.93[ASN][1000 genomes]
rs4957375	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5024275	0.90[ASN][1000 genomes]
rs67047100	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68183441	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72751687	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753965	0.90[ASN][1000 genomes]
rs9716828	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs993153	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41064200-41065200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links