Variant report

Variant	rs1014588
Chromosome Location	chr5:41149284-41149285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10051000	0.96[ASN][1000 genomes]
rs1023840	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10454864	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs111000	0.96[ASN][1000 genomes]
rs11958837	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11959515	0.94[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs13155376	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13161475	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs13179665	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13183645	0.96[ASN][1000 genomes]
rs13185161	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423393	0.90[ASN][1000 genomes]
rs1423396	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423397	0.84[ASN][1000 genomes]
rs1423399	0.96[ASN][1000 genomes]
rs1423400	0.96[ASN][1000 genomes]
rs1423414	0.96[ASN][1000 genomes]
rs1423417	0.96[ASN][1000 genomes]
rs1444910	0.81[EUR][1000 genomes]
rs1593037	0.96[ASN][1000 genomes]
rs1596666	0.81[EUR][1000 genomes]
rs1822821	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs186573	0.95[ASN][1000 genomes]
rs2921173	0.83[EUR][1000 genomes]
rs2921176	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2962282	0.85[EUR][1000 genomes]
rs325811	0.96[ASN][1000 genomes]
rs325812	0.96[ASN][1000 genomes]
rs325814	0.96[ASN][1000 genomes]
rs325815	0.96[ASN][1000 genomes]
rs325880	0.94[ASN][1000 genomes]
rs325881	0.94[ASN][1000 genomes]
rs34319315	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36091790	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366342	0.94[ASN][1000 genomes]
rs3805711	0.96[ASN][1000 genomes]
rs3805712	0.96[ASN][1000 genomes]
rs3805716	0.94[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs407399	0.94[ASN][1000 genomes]
rs4440413	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957370	0.93[ASN][1000 genomes]
rs4957375	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4957377	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5024275	0.96[ASN][1000 genomes]
rs67047100	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68183441	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751687	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72753965	0.96[ASN][1000 genomes]
rs72753986	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9716828	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs993153	0.96[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41140200-41151800	Weak transcription	Pancreas	Pancrea
3	chr5:41141600-41156400	Strong transcription	Liver	Liver
4	chr5:41142200-41150600	Weak transcription	Adipose Nuclei	Adipose
5	chr5:41147600-41151600	Weak transcription	Aorta	Aorta
6	chr5:41148400-41151200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:41148600-41151000	Strong transcription	Fetal Intestine Small	intestine
8	chr5:41148800-41150200	Strong transcription	Fetal Intestine Large	intestine
9	chr5:41149200-41150600	Weak transcription	Ovary	ovary

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