Variant report

Variant	rs1822821
Chromosome Location	chr5:41204661-41204662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1014588	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1023840	0.94[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11958837	0.85[EUR][1000 genomes]
rs11959515	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13155376	0.94[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs13161475	0.94[CEU][hapmap];0.82[JPT][hapmap]
rs13185161	0.85[EUR][1000 genomes]
rs1423396	0.85[EUR][1000 genomes]
rs1444910	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1596666	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16871073	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2004385	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2921173	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2921176	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2962282	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs325882	0.87[YRI][hapmap]
rs34319315	0.81[EUR][1000 genomes]
rs35114048	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36091790	0.88[EUR][1000 genomes]
rs3805716	0.88[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4440413	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4957375	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4957377	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66496966	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67047100	0.88[EUR][1000 genomes]
rs68183441	0.85[EUR][1000 genomes]
rs72751687	0.81[EUR][1000 genomes]
rs72753986	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41195600-41205400	Weak transcription	Pancreas	Pancrea
2	chr5:41204200-41204800	Weak transcription	Fetal Intestine Large	intestine
3	chr5:41204200-41204800	Weak transcription	Fetal Intestine Small	intestine
4	chr5:41204400-41205400	Strong transcription	Liver	Liver

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