Variant report

Variant	rs72753986
Chromosome Location	chr5:41198767-41198768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1014588	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11958837	0.82[EUR][1000 genomes]
rs11959515	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13185161	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1423396	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1444910	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1596666	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16871073	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1822821	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2004385	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2921173	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2921176	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2962282	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35114048	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36091790	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805716	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4440413	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4957375	0.83[EUR][1000 genomes]
rs4957377	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66496966	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67047100	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs68183441	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965601	chr5:41198137-41204629	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine
2	chr5:41194600-41201800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:41195600-41199000	Weak transcription	Left Ventricle	heart
4	chr5:41195600-41205400	Weak transcription	Pancreas	Pancrea
5	chr5:41195800-41201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:41196000-41200400	Genic enhancers	Liver	Liver
7	chr5:41196000-41201200	Weak transcription	Fetal Intestine Large	intestine

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