Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1014588	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1023840	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs11959515	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs13155376	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs13161475	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13179665	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13185161	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1423396	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1822821	0.85[EUR][1000 genomes]
rs2921176	0.83[EUR][1000 genomes]
rs2962282	0.81[EUR][1000 genomes]
rs34319315	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36091790	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3805716	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4440413	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4957375	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4957377	0.85[EUR][1000 genomes]
rs67047100	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68183441	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751687	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72753986	0.82[EUR][1000 genomes]
rs9716828	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv968825	chr5:41115701-41120789	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41112000-41117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:41114800-41116800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:41115600-41116600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:41115600-41117000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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