Variant report

Variant	rs2921176
Chromosome Location	chr5:41211789-41211790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1014588	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1023840	0.94[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs10454864	0.81[CHD][hapmap]
rs11958837	0.83[EUR][1000 genomes]
rs11959515	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13155376	0.94[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs13161475	0.94[CEU][hapmap];0.82[JPT][hapmap]
rs13185161	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1423396	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1444910	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1596666	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16871073	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1822821	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2004385	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2018900	0.81[EUR][1000 genomes]
rs2921173	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2962282	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35114048	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36091790	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805716	0.88[CEU][hapmap];0.85[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4440413	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4957375	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4957377	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66496966	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67047100	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68183441	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72753986	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41209800-41213800	Active TSS	Liver	Liver
2	chr5:41211400-41211800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:41211400-41213800	Active TSS	Right Atrium	heart
4	chr5:41211600-41212000	Enhancers	Fetal Intestine Large	intestine
5	chr5:41211600-41213600	Active TSS	Fetal Intestine Small	intestine
6	chr5:41211600-41213600	Active TSS	Pancreatic Islets	Pancreatic Islet

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