Variant report

Variant	rs2962282
Chromosome Location	chr5:41220448-41220449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1014588	0.85[EUR][1000 genomes]
rs1023840	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs11958837	0.81[EUR][1000 genomes]
rs11959515	0.94[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13155376	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs13161475	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs13185161	0.81[EUR][1000 genomes]
rs1423396	0.81[EUR][1000 genomes]
rs1444910	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1596666	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16871073	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1822821	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2004385	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2018900	0.83[EUR][1000 genomes]
rs2921173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921176	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs325882	0.87[YRI][hapmap]
rs35114048	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36091790	0.85[EUR][1000 genomes]
rs3805716	0.81[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs4440413	0.88[EUR][1000 genomes]
rs4957375	0.82[EUR][1000 genomes]
rs4957377	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66496966	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67047100	0.85[EUR][1000 genomes]
rs68183441	0.81[EUR][1000 genomes]
rs72753986	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41218600-41220600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:41218800-41220600	Enhancers	Brain Anterior Caudate	brain
3	chr5:41219200-41220600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:41219200-41221000	Enhancers	Brain Substantia Nigra	brain
5	chr5:41219400-41220600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:41219600-41220600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:41219600-41221000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:41219600-41223600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:41219800-41220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:41220200-41221000	Enhancers	Pancreatic Islets	Pancreatic Islet

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