Variant report

Variant	rs13185161
Chromosome Location	chr5:41127966-41127967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10051000	0.96[ASN][1000 genomes]
rs1014588	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1023840	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10454864	0.82[CHB][hapmap]
rs111000	0.96[ASN][1000 genomes]
rs11958837	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11959515	0.94[CEU][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes]
rs13155376	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13161475	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13179665	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13183645	0.96[ASN][1000 genomes]
rs1423393	0.90[ASN][1000 genomes]
rs1423396	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423397	0.84[ASN][1000 genomes]
rs1423399	0.96[ASN][1000 genomes]
rs1423400	0.96[ASN][1000 genomes]
rs1423414	0.96[ASN][1000 genomes]
rs1423417	0.96[ASN][1000 genomes]
rs1593037	0.96[ASN][1000 genomes]
rs1822821	0.85[EUR][1000 genomes]
rs186573	0.95[ASN][1000 genomes]
rs2921176	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2962282	0.81[EUR][1000 genomes]
rs325811	0.96[ASN][1000 genomes]
rs325812	0.96[ASN][1000 genomes]
rs325814	0.96[ASN][1000 genomes]
rs325815	0.96[ASN][1000 genomes]
rs325880	0.94[ASN][1000 genomes]
rs325881	0.94[ASN][1000 genomes]
rs325882	1.00[YRI][hapmap]
rs34319315	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36091790	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366342	0.94[ASN][1000 genomes]
rs3805711	0.96[ASN][1000 genomes]
rs3805712	0.96[ASN][1000 genomes]
rs3805716	0.94[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs407399	0.94[ASN][1000 genomes]
rs4440413	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4957370	0.93[ASN][1000 genomes]
rs4957375	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4957377	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5024275	0.96[ASN][1000 genomes]
rs67047100	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68183441	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751687	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72753965	0.96[ASN][1000 genomes]
rs72753986	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9716828	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs993153	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv965600	chr5:41124587-41135092	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41116400-41128400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:41127600-41130600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr5:41127800-41128200	Enhancers	Brain Germinal Matrix	brain

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