Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr5:41161357-41161895	ECC-1	luminal epithelium:	n/a	n/a
2	EP300	chr5:41161302-41161932	ECC-1	luminal epithelium:	n/a	chr5:41161340-41161348

Variant related genes	Relation type
C6	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1014588	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1023840	1.00[ASW][hapmap];0.94[CEU][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap]
rs11958837	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11959515	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs13155376	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs13161475	0.94[CEU][hapmap]
rs13179665	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13185161	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1423396	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1444910	0.82[EUR][1000 genomes]
rs1596666	0.82[EUR][1000 genomes]
rs1822821	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2921173	0.84[EUR][1000 genomes]
rs2921176	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2962282	0.86[EUR][1000 genomes]
rs34319315	0.91[EUR][1000 genomes]
rs35114048	0.81[EUR][1000 genomes]
rs36091790	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4440413	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4957375	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957377	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67047100	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68183441	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72751687	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72753986	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9716828	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41153200-41169000	Weak transcription	Pancreas	Pancrea
4	chr5:41155200-41161600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:41156600-41169000	Weak transcription	Fetal Intestine Large	intestine
6	chr5:41157800-41161800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:41158800-41161600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:41159000-41181800	Weak transcription	Right Ventricle	heart
9	chr5:41159400-41162000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:41160200-41172600	Strong transcription	Liver	Liver
11	chr5:41160600-41162000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:41160800-41162400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:41161200-41162000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:41161400-41161800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:41161400-41161800	Enhancers	Fetal Kidney	kidney

Quick Search: