Variant report
Variant | rs10455326 |
---|---|
Chromosome Location | chr6:63745418-63745419 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10455103 | 0.83[EUR][1000 genomes] |
rs10806084 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10943404 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10943405 | 0.86[EUR][1000 genomes] |
rs12205531 | 0.85[EUR][1000 genomes] |
rs12209157 | 0.84[EUR][1000 genomes] |
rs12528268 | 0.84[EUR][1000 genomes] |
rs12664635 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs13205592 | 0.84[EUR][1000 genomes] |
rs13218757 | 0.83[EUR][1000 genomes] |
rs1341175 | 0.86[EUR][1000 genomes] |
rs1341176 | 0.86[EUR][1000 genomes] |
rs1341178 | 0.86[EUR][1000 genomes] |
rs1341179 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1341181 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1341183 | 0.85[EUR][1000 genomes] |
rs1341198 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs1417693 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1417694 | 0.83[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs1417695 | 0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1417696 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1417697 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1539020 | 0.81[EUR][1000 genomes] |
rs1539021 | 0.82[EUR][1000 genomes] |
rs1578441 | 0.86[EUR][1000 genomes] |
rs1578442 | 0.86[EUR][1000 genomes] |
rs1832763 | 0.86[EUR][1000 genomes] |
rs1856909 | 0.86[EUR][1000 genomes] |
rs1856910 | 0.86[EUR][1000 genomes] |
rs1856913 | 0.83[EUR][1000 genomes] |
rs1934987 | 0.86[EUR][1000 genomes] |
rs1934989 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1954192 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1954193 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1954194 | 0.86[EUR][1000 genomes] |
rs1981257 | 0.82[EUR][1000 genomes] |
rs1981258 | 0.81[EUR][1000 genomes] |
rs1981259 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2050904 | 0.83[EUR][1000 genomes] |
rs2153632 | 0.84[EUR][1000 genomes] |
rs2153634 | 0.87[EUR][1000 genomes] |
rs2153635 | 0.85[EUR][1000 genomes] |
rs2153638 | 0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2153639 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2185574 | 0.84[EUR][1000 genomes] |
rs2185575 | 0.85[EUR][1000 genomes] |
rs2185578 | 0.81[EUR][1000 genomes] |
rs2226071 | 0.82[EUR][1000 genomes] |
rs34625876 | 0.86[EUR][1000 genomes] |
rs4235961 | 0.84[EUR][1000 genomes] |
rs4235962 | 0.84[EUR][1000 genomes] |
rs4277990 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4327675 | 0.83[EUR][1000 genomes] |
rs4349799 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4409168 | 0.83[EUR][1000 genomes] |
rs4424060 | 0.84[EUR][1000 genomes] |
rs4434452 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4540246 | 0.86[EUR][1000 genomes] |
rs4576232 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4636002 | 0.83[EUR][1000 genomes] |
rs4710239 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4710392 | 0.83[EUR][1000 genomes] |
rs4710393 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4710394 | 0.84[EUR][1000 genomes] |
rs4710395 | 0.83[EUR][1000 genomes] |
rs4710396 | 0.86[EUR][1000 genomes] |
rs4710397 | 0.86[EUR][1000 genomes] |
rs6453938 | 0.82[EUR][1000 genomes] |
rs6900914 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6907065 | 0.86[EUR][1000 genomes] |
rs6939766 | 0.83[EUR][1000 genomes] |
rs7746162 | 0.86[EUR][1000 genomes] |
rs7746302 | 0.86[EUR][1000 genomes] |
rs7750310 | 0.82[EUR][1000 genomes] |
rs9294062 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9294065 | 0.91[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs9294066 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9341619 | 0.86[EUR][1000 genomes] |
rs9341623 | 0.86[EUR][1000 genomes] |
rs9343533 | 0.86[EUR][1000 genomes] |
rs9343537 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9343566 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9352392 | 0.81[EUR][1000 genomes] |
rs9352418 | 0.86[EUR][1000 genomes] |
rs9352420 | 0.86[EUR][1000 genomes] |
rs9352423 | 0.86[EUR][1000 genomes] |
rs9352437 | 0.87[EUR][1000 genomes] |
rs9361173 | 0.86[EUR][1000 genomes] |
rs9361174 | 0.86[EUR][1000 genomes] |
rs9361197 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9443320 | 0.84[EUR][1000 genomes] |
rs9443343 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9443344 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9443348 | 0.86[EUR][1000 genomes] |
rs9447827 | 0.81[EUR][1000 genomes] |
rs9447865 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs9447866 | 0.84[EUR][1000 genomes] |
rs9447935 | 0.86[EUR][1000 genomes] |
rs9447939 | 0.86[EUR][1000 genomes] |
rs9447963 | 0.83[AFR][1000 genomes];0.86[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1019831 | chr6:63279677-64230736 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
2 | nsv885979 | chr6:63380661-63753657 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
3 | nsv821649 | chr6:63511879-63888251 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1025099 | chr6:63514227-64055649 | Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv885985 | chr6:63534312-63753657 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv885986 | chr6:63534312-63774385 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv885988 | chr6:63615339-63830759 | Weak transcription Flanking Active TSS Enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv885990 | chr6:63665146-63746291 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | nsv830672 | chr6:63673337-63775429 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
10 | nsv538270 | chr6:63682752-64147241 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
11 | esv2758058 | chr6:63706622-63985889 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
12 | esv2759434 | chr6:63706622-63985889 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
13 | esv34515 | chr6:63723341-63849774 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
14 | esv2757170 | chr6:63723378-63871248 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
15 | nsv885991 | chr6:63726777-63786599 | Enhancers Flanking Active TSS Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
16 | nsv818420 | chr6:63726777-63836640 | Enhancers Flanking Active TSS Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
17 | nsv885992 | chr6:63733495-63863434 | Weak transcription Active TSS Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
18 | nsv5325 | chr6:63733709-63778516 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:63722600-63746000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |