Variant report

Variant	rs10455717
Chromosome Location	chr6:71664999-71665000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1111994	0.87[ASN][1000 genomes]
rs12660945	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71663400-71665800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
2	chr6:71663600-71667000	Active TSS	Brain Cingulate Gyrus	brain
3	chr6:71663800-71667200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr6:71663800-71667600	Active TSS	Brain Anterior Caudate	brain
5	chr6:71664000-71665000	Flanking Active TSS	Fetal Brain Female	brain
6	chr6:71664200-71665200	Enhancers	Brain Substantia Nigra	brain
7	chr6:71664200-71667600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:71664400-71665000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:71664400-71665200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:71664400-71665200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr6:71664600-71665000	Bivalent Enhancer	Primary B cells from cord blood	blood
12	chr6:71664600-71665000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:71664600-71665200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:71664600-71665200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:71664600-71665200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
16	chr6:71664600-71665200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
17	chr6:71664600-71665200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:71664600-71665200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:71664600-71665200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:71664600-71665200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr6:71664600-71665200	Bivalent Enhancer	Fetal Thymus	thymus
22	chr6:71664600-71665200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
23	chr6:71664600-71667000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
24	chr6:71664600-71667400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr6:71664800-71665000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
26	chr6:71664800-71665000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
27	chr6:71664800-71665000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr6:71664800-71665000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
29	chr6:71664800-71665000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:71664800-71665000	Bivalent/Poised TSS	Fetal Brain Male	brain
31	chr6:71664800-71665200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:71664800-71665200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:71664800-71665200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
34	chr6:71664800-71665200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
35	chr6:71664800-71665200	Bivalent Enhancer	Fetal Intestine Small	intestine
36	chr6:71664800-71665200	Bivalent Enhancer	GM12878-XiMat	blood
37	chr6:71664800-71665400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr6:71664800-71665400	Bivalent Enhancer	Fetal Heart	heart
39	chr6:71664800-71665400	Bivalent Enhancer	Fetal Lung	lung
40	chr6:71664800-71666000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
41	chr6:71664800-71666800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
42	chr6:71664800-71667200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
43	chr6:71664800-71667400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
44	chr6:71664800-71667400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:71664800-71667800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links