Variant report

Variant	rs1111994
Chromosome Location	chr6:71676933-71676934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10455717	0.87[ASN][1000 genomes]
rs12660945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460695	1.00[ASW][hapmap];0.87[CEU][hapmap];0.94[GIH][hapmap];0.94[LWK][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs2504740	1.00[ASW][hapmap];0.87[CEU][hapmap];0.94[GIH][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs2504741	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1111994	REEP4	trans	parietal	SCAN
rs1111994	BAI3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71676000-71677200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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