Variant report

Variant	rs10455932
Chromosome Location	chr6:164507352-164507353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:164507086-164507733	K562	blood:	n/a	chr6:164507253-164507266 chr6:164507255-164507265 chr6:164507253-164507266 chr6:164507251-164507266 chr6:164507253-164507268
2	MAX	chr6:164507241-164507582	K562	blood:	n/a	chr6:164507253-164507266 chr6:164507255-164507265 chr6:164507253-164507266 chr6:164507251-164507266 chr6:164507253-164507268
3	ELF1	chr6:164507274-164507588	K562	blood:	n/a	chr6:164507418-164507431
4	BHLHE40	chr6:164507101-164507411	K562	blood:	n/a	chr6:164507255-164507264 chr6:164507255-164507264

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:164507305-164507355	K562	blood:	n/a
2	chr6:164507305-164507355	HIPEpiC	eye:	n/a
3	chr6:164507305-164507355	Hela-S3	cervix:	n/a
4	chr6:164507305-164507355	Hepatocyte	liver:	n/a
5	chr6:164507305-164507355	NT2-D1	testis:	n/a
6	chr6:164507305-164507355	GM12891	blood:	n/a
7	chr6:164507305-164507355	PANC-1	pancreas:	n/a
8	chr6:164507305-164507355	HCM	heart:	n/a
9	chr6:164507305-164507355	HNPCEpiC	eye:	n/a
10	chr6:164507305-164507355	U87	brain:	n/a
11	chr6:164507305-164507355	MCF-7	breast:	n/a
12	chr6:164507305-164507355	PrEC	prostate:	n/a
13	chr6:164507305-164507355	NH-A	brain:	n/a
14	chr6:164507305-164507355	HCF	heart:	n/a
15	chr6:164507305-164507355	BJ	skin:	n/a
16	chr6:164507305-164507355	SK-N-MC	brain:	n/a
17	chr6:164507305-164507355	HUVEC	blood vessel:	n/a
18	chr6:164507305-164507355	HL-60	blood:	n/a
19	chr6:164507305-164507355	SK-N-SH	brain:	n/a
20	chr6:164507305-164507355	HepG2	liver:	n/a
21	chr6:164507305-164507355	HEEpiC	esophagus:	n/a
22	chr6:164507305-164507355	SKMC	muscle:	n/a
23	chr6:164507305-164507355	ECC-1	luminal epithelium:	n/a
24	chr6:164507305-164507355	H1-hESC	embryonic stem cell:	embryo
25	chr6:164507305-164507355	IMR90	lung:	fetal
26	chr6:164507305-164507355	AoSMC	blood vessel:	n/a
27	chr6:164507305-164507355	GM12892	blood:	n/a
28	chr6:164507305-164507355	CMK	blood:	n/a
29	chr6:164507305-164507355	A549	lung:	n/a
30	chr6:164507305-164507355	RPTEC	kidney:	n/a
31	chr6:164507305-164507355	HRCEpiC	kidney:	n/a
32	chr6:164507305-164507355	NHBE	bronchial:	n/a
33	chr6:164507305-164507355	MCF10A-Er-Src	breast:	n/a
34	chr6:164507305-164507355	Jurkat	blood:	n/a
35	chr6:164507305-164507355	NHDF-neo	bronchial:	n/a
36	chr6:164507305-164507355	AG10803	skin:	n/a
37	chr6:164507305-164507355	T-47D	breast:	n/a
38	chr6:164507305-164507355	GM19239	blood:	n/a
39	chr6:164507305-164507355	GM06990	blood:	n/a
40	chr6:164507305-164507355	AG09309	skin:	n/a
41	chr6:164507305-164507355	SK-N-SH_RA	brain:	n/a
42	chr6:164507305-164507355	HEK293	kidney:	embryo
43	chr6:164507305-164507355	BE2_C	brain:	n/a
44	chr6:164507305-164507355	HRE	kidney:	n/a
45	chr6:164507305-164507355	SAEC	small airway:	n/a
46	chr6:164507305-164507355	NB4	blood:	n/a
47	chr6:164507305-164507355	AG04450	lung:	fetal
48	chr6:164507305-164507355	HAEpiC	amniotic membrane:	n/a
49	chr6:164507305-164507355	Caco-2	colon:	n/a
50	chr6:164507305-164507355	GM12878	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000260422	TF binding region
ENSG00000260422	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10945953	0.96[YRI][hapmap]
rs2033705	0.86[JPT][hapmap]
rs7763061	0.87[ASN][1000 genomes]
rs9346992	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164504800-164507400	Enhancers	Fetal Brain Male	brain
2	chr6:164504800-164508000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164504800-164508000	Enhancers	Fetal Muscle Trunk	muscle
4	chr6:164505000-164507400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:164505200-164507600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:164505200-164507600	Enhancers	Fetal Heart	heart
7	chr6:164505200-164507800	Enhancers	Fetal Muscle Leg	muscle
8	chr6:164505200-164507800	Enhancers	Left Ventricle	heart
9	chr6:164505400-164507400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:164505400-164507400	Enhancers	HUVEC	blood vessel
11	chr6:164505400-164507800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:164505800-164507600	Enhancers	HSMM	muscle
13	chr6:164506000-164507400	Flanking Active TSS	NH-A	brain
14	chr6:164506000-164507600	Active TSS	Brain Substantia Nigra	brain
15	chr6:164506400-164507600	Weak transcription	Right Ventricle	heart
16	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:164506600-164507400	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr6:164506600-164507400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr6:164506600-164507400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:164506600-164508000	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:164506800-164507400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:164506800-164507400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:164506800-164507400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:164506800-164507400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:164506800-164507400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:164506800-164507400	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr6:164507000-164507400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:164507000-164507400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:164507000-164507400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:164507000-164507400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr6:164507000-164507600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:164507000-164507800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:164507000-164519200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:164507200-164507400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:164507200-164507400	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr6:164507200-164507400	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr6:164507200-164507400	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr6:164507200-164507400	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr6:164507200-164507400	Active TSS	Fetal Brain Female	brain
40	chr6:164507200-164507400	Enhancers	Pancreas	Pancrea
41	chr6:164507200-164507400	Enhancers	Right Atrium	heart
42	chr6:164507200-164507400	Enhancers	HSMMtube	muscle
43	chr6:164507200-164507600	Enhancers	Psoas Muscle	Psoas
44	chr6:164507200-164507800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:164507200-164508000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:164507200-164508000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:164507200-164508200	Enhancers	Lung	lung
48	chr6:164507200-164508400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr6:164507200-164508400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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