Variant report

Variant	rs9346992
Chromosome Location	chr6:164507104-164507105
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:164507086-164507733	K562	blood:	n/a	chr6:164507253-164507266 chr6:164507255-164507265 chr6:164507253-164507266 chr6:164507251-164507266 chr6:164507253-164507268
2	BHLHE40	chr6:164507101-164507411	K562	blood:	n/a	chr6:164507255-164507264 chr6:164507255-164507264

Variant related genes	Relation type
ENSG00000260422	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10455932	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10945953	0.92[YRI][hapmap]
rs2033705	0.86[JPT][hapmap]
rs7763061	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164504800-164507400	Enhancers	Fetal Brain Male	brain
2	chr6:164504800-164508000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164504800-164508000	Enhancers	Fetal Muscle Trunk	muscle
4	chr6:164505000-164507400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:164505200-164507600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:164505200-164507600	Enhancers	Fetal Heart	heart
7	chr6:164505200-164507800	Enhancers	Fetal Muscle Leg	muscle
8	chr6:164505200-164507800	Enhancers	Left Ventricle	heart
9	chr6:164505400-164507400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:164505400-164507400	Enhancers	HUVEC	blood vessel
11	chr6:164505400-164507800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:164505800-164507600	Enhancers	HSMM	muscle
13	chr6:164506000-164507200	Active TSS	Brain Anterior Caudate	brain
14	chr6:164506000-164507200	Active TSS	Brain Cingulate Gyrus	brain
15	chr6:164506000-164507200	Active TSS	Brain Hippocampus Middle	brain
16	chr6:164506000-164507400	Flanking Active TSS	NH-A	brain
17	chr6:164506000-164507600	Active TSS	Brain Substantia Nigra	brain
18	chr6:164506200-164507200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:164506400-164507200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:164506400-164507200	Flanking Active TSS	Fetal Brain Female	brain
21	chr6:164506400-164507200	Enhancers	Fetal Lung	lung
22	chr6:164506400-164507200	Weak transcription	Lung	lung
23	chr6:164506400-164507200	Weak transcription	Pancreas	Pancrea
24	chr6:164506400-164507600	Weak transcription	Right Ventricle	heart
25	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:164506600-164507200	Active TSS	Psoas Muscle	Psoas
27	chr6:164506600-164507400	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr6:164506600-164507400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr6:164506600-164507400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr6:164506600-164508000	Enhancers	Primary hematopoietic stem cells	blood
31	chr6:164506800-164507200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:164506800-164507200	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr6:164506800-164507200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:164506800-164507200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:164506800-164507200	Flanking Active TSS	Right Atrium	heart
36	chr6:164506800-164507200	Flanking Active TSS	HSMMtube	muscle
37	chr6:164506800-164507200	Active TSS	Monocytes-CD14+_RO01746	blood
38	chr6:164506800-164507400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:164506800-164507400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:164506800-164507400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:164506800-164507400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:164506800-164507400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:164506800-164507400	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr6:164507000-164507200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:164507000-164507200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr6:164507000-164507200	Active TSS	Brain Germinal Matrix	brain
47	chr6:164507000-164507200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:164507000-164507200	Enhancers	NHDF-Ad	bronchial
49	chr6:164507000-164507200	Flanking Active TSS	Osteobl	bone
50	chr6:164507000-164507400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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