Variant report

Variant	rs1045631
Chromosome Location	chr19:18545786-18545787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:18269587..18272195-chr19:18544788..18547771,3	K562	blood:
2	chr19:18495466..18501669-chr19:18543275..18549976,8	K562	blood:
3	chr19:18392120..18393655-chr19:18544047..18545817,2	K562	blood:
4	chr18:12067124..12068644-chr19:18543710..18545856,2	K562	blood:
5	chr19:18484864..18486946-chr19:18543605..18545790,2	K562	blood:

Variant related genes	Relation type
ENSG00000130522	Chromatin interaction
ENSG00000105647	Chromatin interaction
ENSG00000264175	Chromatin interaction
ENSG00000267959	Chromatin interaction
ENSG00000130513	Chromatin interaction
ENSG00000267533	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10402322	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10409346	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10409408	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10410797	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10413922	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10416993	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10418331	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10418554	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10420384	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10423802	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10426768	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11086110	0.88[EUR][1000 genomes]
rs11668704	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11670392	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11672385	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11879757	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12980726	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12982295	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12983263	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1469412	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1469413	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1971093	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2013069	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2162797	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2303692	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28534973	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2891676	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34213500	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35004712	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35742476	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4006662	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4303657	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4580317	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4808135	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4808802	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4808803	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4808805	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4808806	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4808807	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4808808	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4808811	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4808812	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4808813	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55715336	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57923655	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6512268	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6512269	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6512270	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6512271	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7246788	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7247540	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7249760	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7252130	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7252185	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7255936	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7256530	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7258891	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7259135	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7507218	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8100343	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8102717	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8104247	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8106068	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8106332	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8111397	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8111582	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8111824	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8112372	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8112859	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs888668	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs888669	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532614	chr19:18033043-18573963	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
2	esv3323899	chr19:18343484-18620429	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	162 gene(s)	inside rSNPs	diseases
3	nsv911274	chr19:18440942-18691942	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
4	nsv1057795	chr19:18453362-18883844	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv543925	chr19:18453362-18883844	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv428018	chr19:18454891-18663981	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
7	nsv911275	chr19:18484922-18586759	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
8	nsv911276	chr19:18497141-18554972	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
9	nsv911277	chr19:18520231-18552139	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
10	nsv1060687	chr19:18522527-18643218	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
11	nsv911278	chr19:18526536-18550276	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	diseases
12	nsv911279	chr19:18533642-18550276	Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
13	nsv911280	chr19:18533642-18552139	Genic enhancers Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv532615	chr19:18534867-18796031	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
15	esv3429815	chr19:18543377-18545925	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
16	nsv482217	chr19:18545625-18548943	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1045631	LOC646044///SSBP4	Cis_1M	lymphoblastoid	RTeQTL
rs1045631	SSBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18532800-18547600	Weak transcription	HepG2	liver
2	chr19:18538000-18547600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:18538000-18548400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:18541000-18547800	Weak transcription	HSMMtube	muscle
5	chr19:18541600-18546800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr19:18541600-18548000	Weak transcription	Stomach Mucosa	stomach
7	chr19:18542600-18548000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr19:18542800-18545800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:18543400-18546200	Enhancers	Fetal Brain Male	brain
10	chr19:18544000-18546400	Weak transcription	Dnd41	blood
11	chr19:18544200-18546200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr19:18544200-18547000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr19:18544200-18547200	Weak transcription	Primary T cells from cord blood	blood
14	chr19:18544200-18547400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr19:18544200-18547400	Weak transcription	NHDF-Ad	bronchial
16	chr19:18544200-18547800	Weak transcription	Fetal Kidney	kidney
17	chr19:18544400-18545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:18544400-18546400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr19:18544400-18546400	Weak transcription	Gastric	stomach
20	chr19:18544400-18546600	Weak transcription	Liver	Liver
21	chr19:18544400-18546600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr19:18544400-18547000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr19:18544400-18547000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr19:18544400-18547000	Weak transcription	Adipose Nuclei	Adipose
25	chr19:18544400-18547000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr19:18544400-18547400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr19:18544400-18547400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr19:18544400-18547600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr19:18544400-18547600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr19:18544400-18547600	Weak transcription	HSMM	muscle
31	chr19:18544400-18547600	Strong transcription	NHLF	lung
32	chr19:18544400-18547800	Weak transcription	Brain Angular Gyrus	brain
33	chr19:18544400-18548600	Weak transcription	Brain Substantia Nigra	brain
34	chr19:18544800-18547000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:18544800-18547400	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr19:18544800-18547400	Genic enhancers	Placenta	Placenta
37	chr19:18544800-18547400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr19:18545000-18545800	Enhancers	Fetal Heart	heart
39	chr19:18545000-18546000	Weak transcription	Aorta	Aorta
40	chr19:18545000-18546400	Weak transcription	HMEC	breast
41	chr19:18545000-18547200	ZNF genes & repeats	Fetal Intestine Large	intestine
42	chr19:18545000-18547200	Weak transcription	Thymus	Thymus
43	chr19:18545000-18547600	Genic enhancers	Primary T cells fromperipheralblood	blood
44	chr19:18545000-18547600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr19:18545000-18547800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr19:18545200-18545800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr19:18545200-18546000	Enhancers	Primary B cells from peripheral blood	blood
48	chr19:18545200-18546000	Enhancers	Primary hematopoietic stem cells	blood
49	chr19:18545200-18546000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr19:18545200-18546000	Genic enhancers	Fetal Stomach	stomach

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