Variant report

Variant	rs10456448
Chromosome Location	chr6:36900500-36900501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36898801..36900739-chr6:36904348..36905974,2	K562	blood:
2	chr6:36890243..36895519-chr6:36897368..36902270,7	K562	blood:
3	chr6:36899307..36901257-chr6:36904515..36906513,2	MCF-7	breast:
4	chr6:36897578..36900528-chr6:36906376..36908738,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10456445	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10947646	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10947648	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11964396	0.82[ASN][1000 genomes]
rs12111266	0.82[ASN][1000 genomes]
rs12111291	0.82[ASN][1000 genomes]
rs12191780	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12195012	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211502	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215873	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12524649	0.82[ASN][1000 genomes]
rs12525180	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12529769	0.82[ASN][1000 genomes]
rs17552561	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41272192	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41408445	0.82[ASN][1000 genomes]
rs4348312	0.82[ASN][1000 genomes]
rs4714022	0.82[ASN][1000 genomes]
rs55928881	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56240344	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs56302344	0.82[ASN][1000 genomes]
rs66474948	0.82[ASN][1000 genomes]
rs72846078	0.82[ASN][1000 genomes]
rs7745555	0.82[ASN][1000 genomes]
rs7762601	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36884800-36901200	Weak transcription	HMEC	breast
2	chr6:36891600-36901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:36892200-36900600	Weak transcription	HUVEC	blood vessel
4	chr6:36892600-36900800	Weak transcription	NHEK	skin
5	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
6	chr6:36893200-36900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
8	chr6:36893800-36903800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:36894000-36901200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:36894800-36901000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
12	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
14	chr6:36896600-36901400	Weak transcription	Fetal Thymus	thymus
15	chr6:36897000-36903600	Weak transcription	Fetal Stomach	stomach
16	chr6:36897200-36907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:36898000-36900800	Weak transcription	Osteobl	bone
18	chr6:36898200-36901000	Weak transcription	Adipose Nuclei	Adipose
19	chr6:36898200-36901400	Weak transcription	NH-A	brain
20	chr6:36898200-36902200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:36898400-36900800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:36898400-36901200	Enhancers	Hela-S3	cervix
23	chr6:36898600-36900600	Weak transcription	NHLF	lung
24	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
25	chr6:36898800-36900600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:36898800-36900600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:36898800-36906200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:36898800-36906400	Weak transcription	Left Ventricle	heart
29	chr6:36899200-36900600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:36899600-36902000	Enhancers	NHDF-Ad	bronchial
31	chr6:36899800-36900600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:36900400-36900600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:36900400-36900800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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