Variant report

Variant	rs12211502
Chromosome Location	chr6:36901688-36901689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36900982..36902685-chr6:36952294..36954559,3	MCF-7	breast:
2	chr6:36890243..36895519-chr6:36897368..36902270,7	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456445	0.82[EUR][1000 genomes]
rs10456447	0.80[EUR][1000 genomes]
rs10456448	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947646	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947648	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12191780	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12195012	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12215873	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12525180	0.85[EUR][1000 genomes]
rs17552561	0.85[EUR][1000 genomes]
rs41272192	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55928881	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762601	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36891600-36901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
3	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
4	chr6:36893800-36903800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
8	chr6:36897000-36903600	Weak transcription	Fetal Stomach	stomach
9	chr6:36897200-36907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:36898200-36902200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
12	chr6:36898800-36906200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:36898800-36906400	Weak transcription	Left Ventricle	heart
14	chr6:36899600-36902000	Enhancers	NHDF-Ad	bronchial
15	chr6:36900600-36901800	Enhancers	NHLF	lung
16	chr6:36900600-36902000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:36900600-36902000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:36900600-36902200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:36900800-36901800	Enhancers	NHEK	skin
20	chr6:36900800-36901800	Enhancers	Osteobl	bone
21	chr6:36901000-36902800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:36901400-36901800	Enhancers	NH-A	brain
23	chr6:36901400-36902000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:36901600-36902000	Weak transcription	Fetal Thymus	thymus
25	chr6:36901600-36904000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:36901600-36906200	Enhancers	Hela-S3	cervix
27	chr6:36901600-36906200	Weak transcription	HMEC	breast
28	chr6:36901600-36906400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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