Variant report

Variant	rs10456941
Chromosome Location	chr6:121813118-121813119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12201990	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35558685	1.00[AFR][1000 genomes]
rs62427612	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121811800-121813200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:121811800-121813200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:121811800-121813400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:121811800-121814000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:121812400-121813200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:121812400-121813200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:121812400-121813200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:121812600-121813200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:121812600-121813400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:121812600-121813400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:121812600-121813400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:121812800-121813200	Enhancers	Aorta	Aorta
14	chr6:121812800-121816200	Weak transcription	A549	lung
15	chr6:121813000-121813600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:121813000-121814200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:121813000-121824200	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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