Variant report

Variant	rs12201990
Chromosome Location	chr6:121817108-121817109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10456941	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10872223	0.92[ASN][1000 genomes]
rs12191512	0.84[ASN][1000 genomes]
rs12195627	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12196049	0.82[ASN][1000 genomes]
rs12196172	0.83[ASN][1000 genomes]
rs12198502	0.91[ASN][1000 genomes]
rs12204055	0.90[ASN][1000 genomes]
rs12212748	0.84[ASN][1000 genomes]
rs12212833	0.83[ASN][1000 genomes]
rs12215552	0.89[ASN][1000 genomes]
rs2892795	0.91[ASN][1000 genomes]
rs58614102	0.90[ASN][1000 genomes]
rs716013	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12201990	HSF2	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121813000-121824200	Weak transcription	Hela-S3	cervix
3	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:121815000-121817200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:121816800-121820000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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