Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr6:121803005-121803607	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr6:121803025-121803644	SK-N-SH	brain:	n/a	n/a
3	TEAD4	chr6:121803007-121803553	SK-N-SH	brain:	n/a	n/a
4	EP300	chr6:121803075-121803524	Hela-S3	cervix:	n/a	chr6:121803084-121803091
5	TCF12	chr6:121802973-121803627	SK-N-SH	brain:	n/a	n/a
6	TCF12	chr6:121803006-121803674	SK-N-SH	brain:	n/a	n/a
7	JUND	chr6:121803068-121803605	SK-N-SH	brain:	n/a	n/a
8	FOS	chr6:121803040-121803815	MCF10A-Er-Src	breast:	n/a	chr6:121803280-121803291
9	EP300	chr6:121802996-121803660	SK-N-SH	brain:	n/a	chr6:121803084-121803091
10	JUND	chr6:121803101-121803500	Hela-S3	cervix:	n/a	n/a
11	JUND	chr6:121803020-121803554	SK-N-SH	brain:	n/a	n/a
12	JUND	chr6:121802955-121803684	SK-N-SH	brain:	n/a	n/a
13	FOS	chr6:121803081-121803660	HUVEC	blood vessel:	n/a	chr6:121803280-121803291
14	PBX3	chr6:121803030-121803560	SK-N-SH	brain:	n/a	n/a
15	FOSL2	chr6:121803008-121803581	A549	lung:	n/a	n/a
16	GATA3	chr6:121803025-121803667	SK-N-SH	brain:	n/a	n/a
17	FOS	chr6:121802888-121803814	MCF10A-Er-Src	breast:	n/a	chr6:121803280-121803291
18	MEF2A	chr6:121803059-121803500	SK-N-SH	brain:	n/a	n/a
19	JUN	chr6:121803053-121803696	HUVEC	blood vessel:	n/a	chr6:121803335-121803348
20	PBX3	chr6:121803085-121803619	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000219784	TF binding region

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10872223	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12196049	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196172	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12198502	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201990	0.91[ASN][1000 genomes]
rs12204055	0.84[ASN][1000 genomes]
rs12215552	0.83[ASN][1000 genomes]
rs2892795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58614102	0.94[ASN][1000 genomes]
rs716013	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966657	chr6:121786080-121806494	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121801000-121803200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:121801000-121806200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:121801200-121803600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:121801600-121806200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:121801800-121803400	Enhancers	A549	lung
6	chr6:121802000-121803200	Enhancers	NHEK	skin
7	chr6:121802400-121803600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:121802600-121804000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:121802600-121804000	Enhancers	HUVEC	blood vessel
10	chr6:121802600-121808600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:121802800-121803200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:121802800-121803200	Enhancers	Hela-S3	cervix
13	chr6:121802800-121803800	Enhancers	HSMM	muscle
14	chr6:121803000-121803200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:121803000-121803400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:121803000-121803400	Enhancers	NH-A	brain
17	chr6:121803000-121803400	Enhancers	NHDF-Ad	bronchial
18	chr6:121803000-121804000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:121803000-121806000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:121803000-121806200	Weak transcription	HMEC	breast

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