Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457418	0.83[AMR][1000 genomes]
rs10872223	0.84[ASN][1000 genomes]
rs12191512	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12195468	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12195627	0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12196720	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12198502	0.83[ASN][1000 genomes]
rs12200040	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12200135	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12201990	0.89[ASN][1000 genomes]
rs12204055	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12212748	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12212833	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17083709	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2892795	0.83[ASN][1000 genomes]
rs58322826	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58614102	0.83[ASN][1000 genomes]
rs62427658	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62429961	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62429982	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs716013	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12215552	HSF2	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:121817200-121825400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:121820000-121828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:121824200-121829400	Enhancers	Hela-S3	cervix
5	chr6:121824400-121824600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:121824400-121824800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:121824400-121825000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:121824400-121825000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:121824400-121825200	Enhancers	Aorta	Aorta
10	chr6:121824400-121825200	Flanking Active TSS	A549	lung
11	chr6:121824400-121825800	Enhancers	Fetal Lung	lung
12	chr6:121824400-121825800	Enhancers	NHLF	lung
13	chr6:121824400-121826000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:121824400-121826000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:121824400-121826000	Enhancers	NH-A	brain
16	chr6:121824400-121826000	Enhancers	Osteobl	bone
17	chr6:121824400-121826200	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search: