Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457418	0.80[AMR][1000 genomes]
rs10872223	0.85[ASN][1000 genomes]
rs12191512	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12195468	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12195627	0.84[ASN][1000 genomes]
rs12196720	1.00[AFR][1000 genomes]
rs12198502	0.84[ASN][1000 genomes]
rs12200040	1.00[AFR][1000 genomes]
rs12200135	1.00[AFR][1000 genomes]
rs12201990	0.90[ASN][1000 genomes]
rs12212748	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12212833	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215552	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083709	1.00[AFR][1000 genomes]
rs2892795	0.84[ASN][1000 genomes]
rs58322826	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58614102	0.83[ASN][1000 genomes]
rs62427658	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62429961	1.00[AFR][1000 genomes]
rs62429982	1.00[AFR][1000 genomes]
rs716013	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121813000-121824200	Weak transcription	Hela-S3	cervix
3	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:121816800-121820000	Weak transcription	A549	lung
5	chr6:121817200-121825400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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