Variant report

Variant	rs12212748
Chromosome Location	chr6:121827720-121827721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12191512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12196720	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12200040	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12200135	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12201990	0.84[ASN][1000 genomes]
rs12204055	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12212833	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12215552	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17083709	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58322826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62427658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62429961	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62429982	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs716013	0.81[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:121820000-121828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:121824200-121829400	Enhancers	Hela-S3	cervix
4	chr6:121825800-121827800	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:121825800-121827800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:121826000-121827800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:121826000-121827800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:121826000-121827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:121826000-121827800	Weak transcription	Osteobl	bone
10	chr6:121826000-121828000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:121826000-121828000	Weak transcription	NH-A	brain
12	chr6:121826000-121830000	Weak transcription	HUVEC	blood vessel
13	chr6:121826200-121827800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:121826600-121828600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:121826800-121827800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:121826800-121827800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:121826800-121827800	Weak transcription	HMEC	breast
18	chr6:121826800-121828000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:121826800-121831400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:121827200-121827800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:121827400-121828400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:121827600-121828200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:121827600-121828600	Enhancers	A549	lung
24	chr6:121827600-121830600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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