Variant report

Variant	rs10457266
Chromosome Location	chr6:113731925-113731926
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10080444	0.85[EUR][1000 genomes]
rs10080706	0.85[EUR][1000 genomes]
rs1033390	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[EUR][1000 genomes]
rs1033391	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs10484459	0.93[EUR][1000 genomes]
rs10872095	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872097	0.92[EUR][1000 genomes]
rs11153417	0.93[EUR][1000 genomes]
rs11153418	0.93[EUR][1000 genomes]
rs12203134	0.93[EUR][1000 genomes]
rs12214468	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2092086	0.85[EUR][1000 genomes]
rs2092087	0.87[EUR][1000 genomes]
rs2103538	0.87[EUR][1000 genomes]
rs2142641	0.85[EUR][1000 genomes]
rs2179118	0.85[EUR][1000 genomes]
rs2294231	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2348304	0.93[EUR][1000 genomes]
rs4380793	0.85[EUR][1000 genomes]
rs4435975	0.85[EUR][1000 genomes]
rs4945948	0.93[EUR][1000 genomes]
rs6568791	0.87[EUR][1000 genomes]
rs6914474	0.93[EUR][1000 genomes]
rs6914499	0.93[EUR][1000 genomes]
rs6938194	0.87[EUR][1000 genomes]
rs764733	0.85[EUR][1000 genomes]
rs764734	0.85[EUR][1000 genomes]
rs766329	0.85[EUR][1000 genomes]
rs7738898	0.85[EUR][1000 genomes]
rs7758769	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7759869	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs7771550	0.85[EUR][1000 genomes]
rs7771810	0.85[EUR][1000 genomes]
rs7772108	0.85[EUR][1000 genomes]
rs7772790	0.85[EUR][1000 genomes]
rs7776236	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9320453	0.95[CHB][hapmap];0.96[JPT][hapmap];0.93[EUR][1000 genomes]
rs9320455	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes]
rs9320456	0.93[EUR][1000 genomes]
rs9320458	0.85[EUR][1000 genomes]
rs9481352	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9481355	0.85[EUR][1000 genomes]
rs9481356	0.85[EUR][1000 genomes]
rs9481357	0.85[EUR][1000 genomes]
rs9481358	0.85[EUR][1000 genomes]
rs9481359	0.85[EUR][1000 genomes]
rs9481360	0.85[EUR][1000 genomes]
rs9481361	0.85[EUR][1000 genomes]
rs9481365	0.85[EUR][1000 genomes]
rs9488184	0.93[EUR][1000 genomes]
rs9488187	0.85[EUR][1000 genomes]
rs9488189	0.85[EUR][1000 genomes]
rs9488190	0.85[EUR][1000 genomes]
rs9488191	0.85[EUR][1000 genomes]
rs9488195	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:113727600-113732400	Weak transcription	Ovary	ovary
3	chr6:113727800-113733600	Weak transcription	Fetal Kidney	kidney
4	chr6:113727800-113733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:113728000-113732400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:113730600-113732800	Enhancers	NHDF-Ad	bronchial
7	chr6:113731000-113732400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:113731000-113732400	Enhancers	NHLF	lung
9	chr6:113731000-113732800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:113731000-113732800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:113731000-113733000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:113731200-113732800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:113731200-113737200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:113731600-113732400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:113731600-113733000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:113731600-113735000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:113731600-113736200	Enhancers	A549	lung
18	chr6:113731800-113732400	Weak transcription	HSMM	muscle
19	chr6:113731800-113733800	Weak transcription	Osteobl	bone
20	chr6:113731800-113734000	Weak transcription	Stomach Mucosa	stomach

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