Variant report

Variant	rs10872095
Chromosome Location	chr6:113751851-113751852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113750617..113753339-chr6:113755230..113758094,2	MCF-7	breast:
2	chr6:113748860..113752704-chr6:114177965..114181213,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10080444	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10080706	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1033390	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1033391	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10457266	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10484459	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872097	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153417	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11153418	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12203134	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12214468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2092086	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2092087	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2103538	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2142641	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2179118	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2294231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2348304	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4380793	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4435975	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945948	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5001721	0.85[ASN][1000 genomes]
rs6568791	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6914474	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6914499	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6938194	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs764733	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs764734	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs766329	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs766330	0.85[ASN][1000 genomes]
rs7738898	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7758769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759869	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7771550	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7771810	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7772108	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7772790	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7776236	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320453	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320455	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320456	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320457	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9320458	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481352	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9481355	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481356	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481357	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481358	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481359	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481360	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481361	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481365	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9488184	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9488187	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9488189	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9488190	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9488191	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9488195	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113749200-113753600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:113749400-113754200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:113749400-113754200	Weak transcription	HepG2	liver
4	chr6:113750200-113753800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:113750200-113754000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:113750200-113754200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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