Variant report

Variant	rs10457318
Chromosome Location	chr6:117937494-117937495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10457315	0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10872153	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11153672	0.82[JPT][hapmap]
rs11961040	0.84[EUR][1000 genomes]
rs12205963	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1532680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1759	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1967193	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967194	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2062663	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2071825	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2088870	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs210617	0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs210619	0.81[CEU][hapmap]
rs210630	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs210633	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs210637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs210642	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3752848	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946265	0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4946267	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4946269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67663020	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9285425	0.84[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9285426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9320609	0.81[CEU][hapmap]
rs9320612	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320614	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320616	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9320617	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9374671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374674	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9387491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401019	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9401023	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9401025	0.82[EUR][1000 genomes]
rs9489217	0.81[CEU][hapmap]
rs9489223	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9489238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9765895	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9767060	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3333863	chr6:117935959-117940757	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117929400-117938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:117934200-117938600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:117936200-117938400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:117937000-117937600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:117937000-117937600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:117937000-117937800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:117937000-117938000	Enhancers	Placenta	Placenta
8	chr6:117937000-117938200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:117937000-117939000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:117937000-117939000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:117937200-117937600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:117937200-117937600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:117937200-117938600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:117937200-117938600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:117937200-117938600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:117937200-117938600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:117937200-117941200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:117937400-117937600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:117937400-117937600	Active TSS	Placenta Amnion	Placenta Amnion
20	chr6:117937400-117937600	Flanking Active TSS	Osteobl	bone
21	chr6:117937400-117938600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:117937400-117938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:117937400-117941400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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