Variant report

Variant	rs1967193
Chromosome Location	chr6:117921603-117921604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:117793237..117795421-chr6:117921581..117923205,2	MCF-7	breast:
2	chr6:117920370..117923452-chr6:117923960..117927734,3	MCF-7	breast:
3	chr6:117803111..117805938-chr6:117918781..117921818,3	MCF-7	breast:
4	chr6:117919537..117925760-chr6:117993513..117997816,10	K562	blood:
5	chr6:117803575..117805462-chr6:117921337..117926516,4	K562	blood:
6	chr6:117803211..117805462-chr6:117921337..117926538,8	K562	blood:
7	chr6:117919854..117927630-chr6:117992313..117999313,9	K562	blood:
8	chr6:117921339..117924676-chr6:117954310..117957194,3	MCF-7	breast:
9	chr6:117920433..117922107-chr6:117922176..117924055,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000047932	Chromatin interaction
ENSG00000153989	Chromatin interaction
ENSG00000218233	Chromatin interaction
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10457315	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10457318	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872153	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12205963	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501474	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1532680	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1759	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1967194	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2062663	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2071825	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2088870	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs210617	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs210630	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs210633	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs210637	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs210639	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs210642	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3752848	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946265	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4946267	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4946269	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946273	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67663020	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9285425	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9285426	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9320612	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320614	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320616	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9320617	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9374671	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374674	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9387491	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401014	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401019	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9401023	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9489223	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9489238	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9765895	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9767060	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117871600-117922600	Weak transcription	Stomach Mucosa	stomach
2	chr6:117887600-117922200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:117894800-117922400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:117904400-117922800	Weak transcription	Gastric	stomach
5	chr6:117911600-117922000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:117912400-117922200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:117916600-117922400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:117918800-117922000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:117919200-117922000	Weak transcription	Fetal Heart	heart
10	chr6:117919400-117922400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:117919400-117922800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:117919600-117922000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:117919800-117922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:117920000-117922000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:117920000-117922400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:117920000-117922400	Weak transcription	Placenta	Placenta
17	chr6:117920000-117924000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:117920200-117921800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:117920200-117922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:117920400-117922000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:117920400-117922800	Active TSS	Fetal Brain Male	brain
22	chr6:117920400-117924200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:117920400-117924200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:117920400-117924200	Active TSS	NHLF	lung
25	chr6:117920600-117921800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:117920600-117921800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:117920600-117921800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr6:117920600-117921800	Enhancers	Small Intestine	intestine
29	chr6:117920600-117921800	Transcr. at gene 5' and 3'	HSMM	muscle
30	chr6:117920600-117922000	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr6:117920600-117922000	Enhancers	Adipose Nuclei	Adipose
32	chr6:117920600-117922000	Enhancers	Brain Anterior Caudate	brain
33	chr6:117920600-117922000	Enhancers	Brain Substantia Nigra	brain
34	chr6:117920600-117922000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:117920600-117922000	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:117920600-117922200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:117920600-117922600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr6:117920600-117922600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:117920600-117922600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:117920600-117922800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr6:117920600-117924000	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr6:117920600-117924200	Active TSS	HSMMtube	muscle
43	chr6:117920600-117924200	Active TSS	NHDF-Ad	bronchial
44	chr6:117920600-117924400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:117920800-117921800	Enhancers	Colon Smooth Muscle	Colon
46	chr6:117920800-117922200	Enhancers	Primary hematopoietic stem cells	blood
47	chr6:117920800-117922200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:117920800-117922400	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr6:117920800-117922800	Flanking Active TSS	HUVEC	blood vessel
50	chr6:117920800-117924200	Active TSS	A549	lung

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