Variant report

Variant	rs10458293
Chromosome Location	chr7:121568578-121568579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1076430	1.00[ASN][1000 genomes]
rs12706383	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13225749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246377	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916884	1.00[ASN][1000 genomes]
rs34636578	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34742819	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35919075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736567	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571049	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571051	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:121565600-121568600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:121565600-121571000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:121565800-121571000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:121565800-121571400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:121565800-121571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:121565800-121576800	Weak transcription	Fetal Brain Female	brain
8	chr7:121566000-121570800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:121566000-121571600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:121566600-121571400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:121566800-121568600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:121566800-121569000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:121566800-121571400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:121566800-121571600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:121567200-121568600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:121567200-121570800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:121567400-121571400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:121567600-121571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:121567800-121568600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:121568400-121569000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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