Variant report

Variant	rs13225749
Chromosome Location	chr7:121592914-121592915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10458293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1076430	1.00[ASN][1000 genomes]
rs1206361	0.81[GIH][hapmap]
rs1206362	0.81[GIH][hapmap]
rs1206371	0.81[GIH][hapmap]
rs12706383	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246377	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1725067	0.81[GIH][hapmap]
rs1916884	1.00[ASN][1000 genomes]
rs279673	0.81[GIH][hapmap]
rs279676	0.81[GIH][hapmap]
rs279679	0.81[GIH][hapmap]
rs279701	0.81[GIH][hapmap]
rs34636578	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34742819	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35919075	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736567	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571049	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571051	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121571600-121597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:121571800-121601200	Weak transcription	Esophagus	oesophagus
3	chr7:121582200-121595000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:121586200-121601200	Weak transcription	Fetal Brain Female	brain
6	chr7:121586400-121593800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:121587600-121593600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:121588000-121593200	Weak transcription	NHEK	skin
9	chr7:121590600-121595200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:121590600-121596000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:121591800-121593000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:121591800-121593000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:121591800-121597800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:121592000-121593600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:121592000-121595000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:121592000-121595400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:121592200-121595600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:121592400-121594200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:121592600-121593400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:121592600-121595400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr7:121592800-121595800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links